PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00398.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 740aa MW: 83233.1 Da PI: 6.5549

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00398.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	236.3	1.3e-72	248	593	3	360
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 +lL++cA+av++++ + a +lL+++++ as +g+++qRla +f+++L+arla+++++ly+ ++ s ++e l a++l Zmw_sc00398.1.g00060.1.am.mk 248 TLLTHCAQAVAANNRASAWQLLNQIKQDASTTGNATQRLARCFAKGLEARLAGTGTQLYQFRMGEPPS---TVEYLEAYQL 325 68*******************************************************877766666...89**** PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQ..WpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 ++ v+ + k++ ++I++ + g+++vHi+D+++ + +Q W+ Ll+ La+R++g+p+++iT++++p + +e++ee Zmw_sc00398.1.g00060.1.am.mk 326 YVSVCSFDKVALCFSAKTIVDTIVGKSKVHIVDYGLDYAFQlrWAGLLELLANREGGSPEVKITAINHPGHWfyPAEQMEE 406 *******************************99998888*********************99889**** PP GRAS 161 tgerLakfAeelgvp.fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkv 238 tg+rL+k A+elg++ f+f++ + k++ed+ +++L+++++E+l+Vn +++l +l+desv ++ +rd+vL+ + +++P v Zmw_sc00398.1.g00060.1.am.mk 407 TGSRLHKWAAELGLRyFKFHT-IKKKWEDVCIQDLDTESNEVLIVNDHFNLSTLMDESVFFDDpcPRDAVLSNIAKMRPAV 486 **********77*.7********************************9999999*********** PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319 ++ ++ + ++sFl rf al yy+alfd+l+a++pres++r+++E+el+g a e++ +W++r Zmw_sc00398.1.g00060.1.am.mk 487 FIQNVVNCTY-GTSFLSRFRGALFYYMALFDMLDATIPRESKQRVVLEQELFGGY---------A----HPEKYTQWQARN 553 99999999.679**********************************99854.........3....3789**** PP GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360 ++aG++++pl+ +++k++ + ++k+++d + + e+ ++l++ Zmw_sc00398.1.g00060.1.am.mk 554 QRAGLRQIPLKPYIVKEVASKIKKHHKD-FLLSEDGHWLLQ 593 **********************77.***9887764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.487	220	588	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.5E-70	248	593	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence Send to blast
MTPTPEEFFV HCLMEQSPPS PSLCPDLPSL PDAYGEGWLF PNEMMLPHIS RMLMEDDTEE 60 KLSDDPALLR VQQPFAEILF DPSFGTDMGN NVNRRGNTEG PMDLMQDGSC YQMTAESAFA 120 KGADAVGAFL RGMEEAKTFL PKYGSFREDD LVSQLFREST NHGGPRTNNS KDDLLEAAVS 180 MTDEPMTMTK EQAERVDASE MLDGMMWQGC EKFVRDMEKL RITMANEAEE DRRKDRSNTA 240 RVVVDLPTLL THCAQAVAAN NRASAWQLLN QIKQDASTTG NATQRLARCF AKGLEARLAG 300 TGTQLYQFRM GEPPSTVEYL EAYQLYVSVC SFDKVALCFS AKTIVDTIVG KSKVHIVDYG 360 LDYAFQLRWA GLLELLANRE GGSPEVKITA INHPGHWFYP AEQMEETGSR LHKWAAELGL 420 RYFKFHTIKK KWEDVCIQDL DTESNEVLIV NDHFNLSTLM DESVFFDDPC PRDAVLSNIA 480 KMRPAVFIQN VVNCTYGTSF LSRFRGALFY YMALFDMLDA TIPRESKQRV VLEQELFGGY 540 AHPEKYTQWQ ARNQRAGLRQ IPLKPYIVKE VASKIKKHHK DFLLSEDGHW LLQGLPLLAW 600 RGCTRIRGMY AMLQRPSEIR LLLNEQEESP KNPPHYSRSC PLLLMLAVPM PKLPRSLPAV 660 EAATLLLLAA RTTTRPPPPL PHHGPMSTLA AHGHPAARTP PQREAGGGCA RRTVSMDGQQ 720 VVLDSGGRKR ARKTSSWRTA

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence Send to blast

MTPTPEEFFV HCLMEQSPPS PSLCPDLPSL PDAYGEGWLF PNEMMLPHIS RMLMEDDTEE  60
KLSDDPALLR VQQPFAEILF DPSFGTDMGN NVNRRGNTEG PMDLMQDGSC YQMTAESAFA  120
KGADAVGAFL RGMEEAKTFL PKYGSFREDD LVSQLFREST NHGGPRTNNS KDDLLEAAVS  180
MTDEPMTMTK EQAERVDASE MLDGMMWQGC EKFVRDMEKL RITMANEAEE DRRKDRSNTA  240
RVVVDLPTLL THCAQAVAAN NRASAWQLLN QIKQDASTTG NATQRLARCF AKGLEARLAG  300
TGTQLYQFRM GEPPSTVEYL EAYQLYVSVC SFDKVALCFS AKTIVDTIVG KSKVHIVDYG  360
LDYAFQLRWA GLLELLANRE GGSPEVKITA INHPGHWFYP AEQMEETGSR LHKWAAELGL  420
RYFKFHTIKK KWEDVCIQDL DTESNEVLIV NDHFNLSTLM DESVFFDDPC PRDAVLSNIA  480
KMRPAVFIQN VVNCTYGTSF LSRFRGALFY YMALFDMLDA TIPRESKQRV VLEQELFGGY  540
AHPEKYTQWQ ARNQRAGLRQ IPLKPYIVKE VASKIKKHHK DFLLSEDGHW LLQGLPLLAW  600
RGCTRIRGMY AMLQRPSEIR LLLNEQEESP KNPPHYSRSC PLLLMLAVPM PKLPRSLPAV  660
EAATLLLLAA RTTTRPPPPL PHHGPMSTLA AHGHPAARTP PQREAGGGCA RRTVSMDGQQ  720
VVLDSGGRKR ARKTSSWRTA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-28	252	563	25	334	Protein SCARECROW
5b3h_A	9e-28	252	563	24	333	Protein SCARECROW
5b3h_D	9e-28	252	563	24	333	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978278.1	0.0	scarecrow-like protein 33
TrEMBL	A0A3L6F749	0.0	A0A3L6F749_MAIZE; Scarecrow-like protein 33
STRING	Si024639m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297