PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00396.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 433aa MW: 47303.5 Da PI: 8.9985 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.8e-16 | 159 | 217 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 +g+W++eEd +l++ ++++G+g W+ Ia+ ++ gRt++++k++w++ Zmw_sc00396.1.g00010.1.am.mk 159 KGPWSPEEDAKLKEFIEKHGTGgnwialpqkagmhdPWSIIASQLP-GRTDNDIKNYWNT 217 79********************************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.23E-14 | 145 | 223 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.6E-23 | 150 | 223 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.089 | 154 | 223 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-16 | 158 | 221 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 159 | 217 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-12 | 161 | 219 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MKCVLPRPGS CGLDFCRLAS QLLRLRHGGR ILIKREKSRD MDGCGAVSRR KQRGICMWLD 60 EERFQRETQG IMLAAGVNSA SLIIGRVYQK RLLEPAVSSR RSISLQRAAT YSPACPPTNT 120 GQLMSDAQAG LSSGLRAGRS FCCDLMGRAP CCDKNNVKKG PWSPEEDAKL KEFIEKHGTG 180 GNWIALPQKA GMHDPWSIIA SQLPGRTDND IKNYWNTKLK KKLLGSSSMT APPHRAPRQH 240 HRPLNLMLQN TSSSLSQLTY SGFFPETAGS LHDSIIPALT LPPPQDFMLS SSLAIPNASS 300 LLHAHGGTQQ QLLHQHVVKE ESGSMIVFGS DQQSCSSSDV GAHSRPQFSH GKELSFDGYY 360 GYSLNGSIGN HDHGSLLQLQ EHHQQAQVPV EYSYDAIKQL LMSSNGNNLH GGGQDHDDGG 420 MEGFGAQGKV TIR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975125.1 | 1e-135 | transcription factor RAX2 | ||||
TrEMBL | A0A3L6Q925 | 1e-138 | A0A3L6Q925_PANMI; Transcription factor RAX2-like | ||||
STRING | Si010627m | 1e-134 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |