PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00396.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 433aa    MW: 47303.5 Da    PI: 8.9985
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00396.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.8e-16159217146
                                   TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 
                                   +g+W++eEd +l++ ++++G+g               W+ Ia+ ++ gRt++++k++w++
  Zmw_sc00396.1.g00010.1.am.mk 159 KGPWSPEEDAKLKEFIEKHGTGgnwialpqkagmhdPWSIIASQLP-GRTDNDIKNYWNT 217
                                   79********************************************.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.23E-14145223IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-23150223IPR009057Homeodomain-like
PROSITE profilePS5129420.089154223IPR017930Myb domain
SMARTSM007171.2E-16158221IPR001005SANT/Myb domain
PfamPF002493.0E-14159217IPR001005SANT/Myb domain
CDDcd001671.27E-12161219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MKCVLPRPGS CGLDFCRLAS QLLRLRHGGR ILIKREKSRD MDGCGAVSRR KQRGICMWLD  60
EERFQRETQG IMLAAGVNSA SLIIGRVYQK RLLEPAVSSR RSISLQRAAT YSPACPPTNT  120
GQLMSDAQAG LSSGLRAGRS FCCDLMGRAP CCDKNNVKKG PWSPEEDAKL KEFIEKHGTG  180
GNWIALPQKA GMHDPWSIIA SQLPGRTDND IKNYWNTKLK KKLLGSSSMT APPHRAPRQH  240
HRPLNLMLQN TSSSLSQLTY SGFFPETAGS LHDSIIPALT LPPPQDFMLS SSLAIPNASS  300
LLHAHGGTQQ QLLHQHVVKE ESGSMIVFGS DQQSCSSSDV GAHSRPQFSH GKELSFDGYY  360
GYSLNGSIGN HDHGSLLQLQ EHHQQAQVPV EYSYDAIKQL LMSSNGNNLH GGGQDHDDGG  420
MEGFGAQGKV TIR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975125.11e-135transcription factor RAX2
TrEMBLA0A3L6Q9251e-138A0A3L6Q925_PANMI; Transcription factor RAX2-like
STRINGSi010627m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412