PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00389.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 741aa MW: 81342.7 Da PI: 10.8726

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00389.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43	8.2e-14	519	570	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++ + + a+i+ A++Y+++L+ Zmw_sc00389.1.g00170.1.am.mk 519 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 570 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.26E-12	517	574	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-13	518	574	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.904	518	569	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.2E-16	518	582	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-11	519	570	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.1E-11	524	575	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence Send to blast
MCLSVPRRTA AADSIQNMPS RDVFAPRIMT LLPPLRGQTR VCTRVVRSGP PVHHGEQERR 60 RLHLHGRDLQ LIKCATRRNA MLVRSKDEEA YDCARWPRPR DLTSAVPGRG NRISAADRAA 120 QSDRRKRLAS RPPPPQRAAD TTGLLRATGR AKEGDLLARV CMQAGLQIIT GISCRHSRTR 180 PLGTDQRTRH AAERHGGADV SIRAKLFKLD ACGYQANQAV TPGINSIAAK SGTTHRGIGR 240 IQSYSGVCHC AVAMHTELEQ DEQEDMIGCW RRRAPGHCHW RPSHAAQNRS ICAPVLTIPL 300 QQLLNHRPYI HFAIKPSTLS VLRKAPAYAA CRPAHLGGVS WPGNEQRREA IRPRAESLVN 360 HCLVRPPKHK TPPVARGPGC RVRVRLAHLT RPPSYKTRHR RAASPRRTHI HTPAVVFSQQ 420 AGGHFGYGRV DSPYALPWWD LPGSAGFGFA GAGWDPDGLH ASVAAPDVVD EWETASAKQD 480 QSSEASTEGK RAAVPAAAPE RRKRRRTKVV KNKEEIETQR MTHIAVERNR RRQMNEYLAV 540 LRSLMPPSYA HRGDQASIVG GAINYVRELE QLLQSLEVQR SIKNRVGCSC TDAAGKSPFA 600 GFFTFPQYST SSTHAGCGTA TTASSSNSTS SVVTGDAAGS ATTARPAAVA DIEVTMVEGH 660 ASLKVLARRR PKQLLRLVAA LQQLRVPPLH LNVTSLDGMV LYTFSLKVED DSRMGPVEDI 720 ATAVHEILSS IQKQEEETAV M

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence Send to blast

MCLSVPRRTA AADSIQNMPS RDVFAPRIMT LLPPLRGQTR VCTRVVRSGP PVHHGEQERR  60
RLHLHGRDLQ LIKCATRRNA MLVRSKDEEA YDCARWPRPR DLTSAVPGRG NRISAADRAA  120
QSDRRKRLAS RPPPPQRAAD TTGLLRATGR AKEGDLLARV CMQAGLQIIT GISCRHSRTR  180
PLGTDQRTRH AAERHGGADV SIRAKLFKLD ACGYQANQAV TPGINSIAAK SGTTHRGIGR  240
IQSYSGVCHC AVAMHTELEQ DEQEDMIGCW RRRAPGHCHW RPSHAAQNRS ICAPVLTIPL  300
QQLLNHRPYI HFAIKPSTLS VLRKAPAYAA CRPAHLGGVS WPGNEQRREA IRPRAESLVN  360
HCLVRPPKHK TPPVARGPGC RVRVRLAHLT RPPSYKTRHR RAASPRRTHI HTPAVVFSQQ  420
AGGHFGYGRV DSPYALPWWD LPGSAGFGFA GAGWDPDGLH ASVAAPDVVD EWETASAKQD  480
QSSEASTEGK RAAVPAAAPE RRKRRRTKVV KNKEEIETQR MTHIAVERNR RRQMNEYLAV  540
LRSLMPPSYA HRGDQASIVG GAINYVRELE QLLQSLEVQR SIKNRVGCSC TDAAGKSPFA  600
GFFTFPQYST SSTHAGCGTA TTASSSNSTS SVVTGDAAGS ATTARPAAVA DIEVTMVEGH  660
ASLKVLARRR PKQLLRLVAA LQQLRVPPLH LNVTSLDGMV LYTFSLKVED DSRMGPVEDI  720
ATAVHEILSS IQKQEEETAV M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	501	505	RKRRR
2	501	506	RKRRRT
3	519	530	RMTHIAVERNRR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156