PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00389.1.g00130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 306aa MW: 33667.9 Da PI: 4.7052 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.5e-19 | 64 | 117 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +eq+++Le++Fe +++++ ++++ +A+ l L+ rqV vWFqNrRa++k Zmw_sc00389.1.g00130.1.sm.mkhc 64 KKRRLAQEQVRVLERCFETDNKLDPDRKACIARDLALQPRQVAVWFQNRRARWK 117 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 125.3 | 2.8e-40 | 63 | 155 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 ekkrrl++eqv++LE++Fe+++kL+p+rK+ +ar+L lqprqvavWFqnrRAR+ktk+lE+d++aL++++dal+++ ++ Zmw_sc00389.1.g00130.1.sm.mkhc 63 EKKRRLAQEQVRVLERCFETDNKLDPDRKACIARDLALQPRQVAVWFQNRRARWKTKHLERDFAALRARHDALRADCDA 141 69***************************************************************************** PP HD-ZIP_I/II 80 LekeveeLreelke 93 L++++++L++e++e Zmw_sc00389.1.g00130.1.sm.mkhc 142 LRRDKDALAAEIRE 155 *********99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-18 | 56 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-16 | 62 | 123 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 15.726 | 63 | 119 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.9E-16 | 64 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.67E-15 | 64 | 120 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-19 | 70 | 118 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 94 | 117 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.6E-14 | 119 | 160 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MKRQSKQRLT SSRESTGTGE DLAFAEEENL TARNMEREET EMEDVDEDDD EPARGRSTCG 60 LGEKKRRLAQ EQVRVLERCF ETDNKLDPDR KACIARDLAL QPRQVAVWFQ NRRARWKTKH 120 LERDFAALRA RHDALRADCD ALRRDKDALA AEIRELRQKL PNPEPTVKVE ATGNDAAEDR 180 QGTVGASATA VYKDGSSESD SSVVFNDVEA SPYSGAVFEQ PPQSGGFVGF GGSLIDSAAA 240 TMACSFLPPF GTNWHHGSAT YPCHPYKGGG DSFGFTEEWL AGSDVISSDG VAGFFADDHA 300 SSFNFS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465732.1 | 1e-125 | homeobox-leucine zipper protein HOX13 isoform X2 | ||||
Swissprot | Q10QP3 | 2e-90 | HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13 | ||||
TrEMBL | A0A0A9PIJ1 | 1e-133 | A0A0A9PIJ1_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ia04906.1.p | 1e-125 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4283 | 31 | 70 |
Publications ? help Back to Top | |||
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