PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00382.1.g00210.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 262aa MW: 28741.5 Da PI: 5.0392

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00382.1.g00210.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	80.5	2.5e-25	11	69	2	60
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y ++ed+ ++++isw+++g++fvv+ ++efa+++Lpk+Fkhsnf+SFvRQLn+Y Zmw_sc00382.1.g00210.1.am.mk 11 FLTKTYAMVEDPGTDDTISWNDTGKAFVVWRPDEFARDLLPKHFKHSNFSSFVRQLNTY 69 9********************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.5E-28	5	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.2E-29	7	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	7.48E-24	9	69	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.6E-22	11	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-14	11	34	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-14	49	61	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-14	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.20.5.170	1.8E-4	106	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MASPAAGTPP FLTKTYAMVE DPGTDDTISW NDTGKAFVVW RPDEFARDLL PKHFKHSNFS 60 SFVRQLNTYV SSHPFSSSYT QPFVRLDRDH ELGLCCVQGF KKVVADRWDG AVAELEEENA 120 RLRRENARLT RELARARRLC DGVRRLMSRY DHGGEGEDEA GSDGGRGGGA GPGGKPMLFG 180 VAIGSKRHRG NEEEEEEDDG AEDNGEEEDD DDERPVVRAR ESKKRNDQSD LDVLALSVRA 240 AAAARPGSGA AAGSRDRKSS VS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-17	1	69	11	78	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015691545.1	2e-56	PREDICTED: heat stress transcription factor B-2a-like
Swissprot	Q7XRX3	3e-43	HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBL	A0A3B6CD74	2e-67	A0A3B6CD74_WHEAT; Uncharacterized protein
TrEMBL	A0A446MKJ3	2e-67	A0A446MKJ3_TRITD; Uncharacterized protein
STRING	MLOC_65182.1	3e-67	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Publications ? help Back to Top
Nakayama A, et al. Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice. BMC Plant Biol., 2013. 13: p. 150 [PMID:24093634]