PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00382.1.g00190.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 986aa MW: 107177 Da PI: 10.6735

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00382.1.g00190.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.6	6.7e-21	621	676	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le+lF++ ++p++++r+eL+k+lgL+ rq+k+WFqNrR+++k Zmw_sc00382.1.g00190.1.am.mk 621 KKRYHRHTPHQIQQLEALFKQYPHPDEKQRAELSKRLGLEPRQIKFWFQNRRTQMK 676 678899***********************************************999 PP
2	START	42.6	1.6e-14	765	808	163	206
EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vtwveh++++++++h+l+r+l++sgla+ga +w+atlqrqce+ Zmw_sc00382.1.g00190.1.am.mk 765 HVTWVEHTEYDEASVHQLYRPLLQSGLAFGAGRWLATLQRQCEC 808 69****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.68E-21	603	678	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-23	604	672	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.269	618	678	IPR001356	Homeobox domain
SMART	SM00389	1.8E-19	619	682	IPR001356	Homeobox domain
CDD	cd00086	1.17E-18	621	678	No hit	No description
Pfam	PF00046	2.4E-18	621	676	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	653	676	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	11.445	755	811	IPR002913	START domain
Pfam	PF01852	2.2E-10	765	808	IPR002913	START domain
SuperFamily	SSF55961	1.39E-5	877	979	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 986 aa Download sequence Send to blast
MAIVIELREA APRQVNERTI SRAGAARLFP VVPSVQAFRL SNLDQFLQLA GHESLPEPNW 60 ETFRGSVASL LRAPCCEQTV AVSTAVHTRS DRRFSATPSF HTRMDSNRRS LLSHARKSPT 120 NGDGHCGSTR GLIAAHRLKP TDRSYAAKVS AVPLYSSASE ILARYVVAVW QRTCRRNVPC 180 VRTIVRLARD NEKDSTAPLG AAAGAQSFIH RGHGRSVLVM VGTARGPARK ASWDRQPART 240 WAEHSGGRRA WRPWTPGSRW TTTRTLGGPL RRGQTWVRGP PDSRAAHWST VVVVWLSTLI 300 AFFWKTPVRT NDMSLTFGKS GGNSGRQPGL AARTLYVKKK KKTGRARLKL NRTPPEDACP 360 VRTLQRFGCH PPDHRHSRPT PLRVRTRFPA AAIEFSYRLA SVGSSSHGPR RPYTPSGAVG 420 HTRTAQARHL PKSSRTARRP LSRLTPAVSP PRRSKQAANR AASAAPNNTN ARLIDCPWLH 480 ILLQDQRPGL LALTCPAQGS THGTLQWGAG EPSYCPVPGS LLLPLLLLTC LAGSLRFHSA 540 PSAATGGGRA HEERAAAQGM SFGGLFDGCE GPGAMAGVQY PAVSGVVVEN GSLSACDHAD 600 AVFSGGGSED DADAGNPRKR KKRYHRHTPH QIQQLEALFK QYPHPDEKQR AELSKRLGLE 660 PRQIKFWFQN RRTQMKTQLE RHENALLKQE NDKLRAENQS VREALTNLVC GNCGGPAMLG 720 EVSLEEHHLR LENARLRDEL THVCALAAKF IDKPISPMAA PPQMHVTWVE HTEYDEASVH 780 QLYRPLLQSG LAFGAGRWLA TLQRQCECLA ILMSSIAMPE RDSAGVRASS AREWSKLDCL 840 TGSIGADVRV MVRKSVDEPG VPPGVVLSAA TSPTSPNQNS MLILQETCTD ESGAMVVYAP 900 VDIPAMQLVM GGGDSTCVAL LPSGFAILPG GPCISAKTNG SLLTVAFQIL VNSQPTAKLT 960 AESVDTVNNL IACTIKKIKA ALHCDV

Sequence ? help Back to Top

Protein Sequence Length: 986 aa Download sequence Send to blast

MAIVIELREA APRQVNERTI SRAGAARLFP VVPSVQAFRL SNLDQFLQLA GHESLPEPNW  60
ETFRGSVASL LRAPCCEQTV AVSTAVHTRS DRRFSATPSF HTRMDSNRRS LLSHARKSPT  120
NGDGHCGSTR GLIAAHRLKP TDRSYAAKVS AVPLYSSASE ILARYVVAVW QRTCRRNVPC  180
VRTIVRLARD NEKDSTAPLG AAAGAQSFIH RGHGRSVLVM VGTARGPARK ASWDRQPART  240
WAEHSGGRRA WRPWTPGSRW TTTRTLGGPL RRGQTWVRGP PDSRAAHWST VVVVWLSTLI  300
AFFWKTPVRT NDMSLTFGKS GGNSGRQPGL AARTLYVKKK KKTGRARLKL NRTPPEDACP  360
VRTLQRFGCH PPDHRHSRPT PLRVRTRFPA AAIEFSYRLA SVGSSSHGPR RPYTPSGAVG  420
HTRTAQARHL PKSSRTARRP LSRLTPAVSP PRRSKQAANR AASAAPNNTN ARLIDCPWLH  480
ILLQDQRPGL LALTCPAQGS THGTLQWGAG EPSYCPVPGS LLLPLLLLTC LAGSLRFHSA  540
PSAATGGGRA HEERAAAQGM SFGGLFDGCE GPGAMAGVQY PAVSGVVVEN GSLSACDHAD  600
AVFSGGGSED DADAGNPRKR KKRYHRHTPH QIQQLEALFK QYPHPDEKQR AELSKRLGLE  660
PRQIKFWFQN RRTQMKTQLE RHENALLKQE NDKLRAENQS VREALTNLVC GNCGGPAMLG  720
EVSLEEHHLR LENARLRDEL THVCALAAKF IDKPISPMAA PPQMHVTWVE HTEYDEASVH  780
QLYRPLLQSG LAFGAGRWLA TLQRQCECLA ILMSSIAMPE RDSAGVRASS AREWSKLDCL  840
TGSIGADVRV MVRKSVDEPG VPPGVVLSAA TSPTSPNQNS MLILQETCTD ESGAMVVYAP  900
VDIPAMQLVM GGGDSTCVAL LPSGFAILPG GPCISAKTNG SLLTVAFQIL VNSQPTAKLT  960
AESVDTVNNL IACTIKKIKA ALHCDV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	616	622	PRKRKKR
2	617	621	RKRKK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP21042	4	5