PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00377.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 436aa    MW: 48112.2 Da    PI: 6.6935
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00377.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.11.7e-27320370151
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                   k r+rWt++LHerFv++v+ LGG+ekAtPk il++m+  gLt++h+kSHLQ
  Zmw_sc00377.1.g00160.1.am.mk 320 KMRIRWTQDLHERFVDCVNMLGGAEKATPKGILNMMNHAGLTIYHIKSHLQ 370
                                   67************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.03317377IPR017930Myb domain
SuperFamilySSF466895.02E-13318371IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-23319370IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-19320371IPR006447Myb domain, plants
PfamPF002496.0E-7324370IPR001005SANT/Myb domain
PfamPF143796.9E-8367395IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MGLLRLVALK QNCPLHSNGK SDISPLPKKP TVTGCASGGR ELTRVSCNSG RHERPRILPC  60
LLWGSPSKDW YCLLVQFPNF VSPDTKKNIK LCDYNYGSSL CERPLLSGIA PWLSFYAGLV  120
SSVLQRHAAA GSLMRNEYIS SARSVLATLG NSVVGFDNNE FSFEHLLGMA PLDCAPGSTT  180
PSTVVALGTA PFGRSPETEQ LYRSVDPPLL RDDSVMTYHV PPLHLDAEES PPVKMPLQQL  240
DRRQGVFQNA STDKLIVRDH AILSISPHVR SGDCTLLPAM EAPSVQSTME NPLPRIYNIN  300
APAIHTGTIA MAPRQGVPSK MRIRWTQDLH ERFVDCVNML GGAEKATPKG ILNMMNHAGL  360
TIYHIKSHLQ IQTNLQLRIE AQGKVLQTML EEQLEASRSM LELDPWEEMM RGVGAVFPLD  420
GEQQEDVFDD VELLQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-18320370252Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-18320370252Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-18320370151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-18320370151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-18320370151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-18320370151Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-18320370252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-18320370252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-18320370252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-18320370252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-18320370252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-18320370252Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822779.11e-104probable transcription factor KAN2
RefseqXP_025822780.11e-104probable transcription factor KAN2
TrEMBLA0A2T7D1E31e-103A0A2T7D1E3_9POAL; Uncharacterized protein
TrEMBLA0A3L6PZL81e-103A0A3L6PZL8_PANMI; Uncharacterized protein
STRINGSi022099m3e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69333751