PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00377.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 317aa    MW: 33867.3 Da    PI: 9.1503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00377.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.3e-12138184455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +    Er+RR r+ +++ +Lr+l+P+      +K++Ka+i   AveY+ksLq
  Zmw_sc00377.1.g00110.1.sm.mkhc 138 KTVVLERKRRVRMTEKLYQLRSLVPNI-----TKMDKASIIGDAVEYVKSLQ 184
                                     55679*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.52E-13132184No hitNo description
PROSITE profilePS5088815.707134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-17134206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16136201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9138184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MERHLLQPQH LMPSSGFFNL NGGSVAHFPS CGGCGFAAAP AGLLHDCGWA GDPMQLGGEM  60
FGGGVNTVCA LVGNQGWQCV DGSSLRDPPQ ASISLDGDGD GRPPLAVAER QSVPELAAKP  120
RRDEGNVMGA RKRKDRAKTV VLERKRRVRM TEKLYQLRSL VPNITKMDKA SIIGDAVEYV  180
KSLQSHARKL KEEVAALKAR QWSSSRQDPR HDHGVAVAND KRQDEDATGG ARAASVGATR  240
VGEGRFLVTV ECERRDGAAA RLFAAVESLA CFRVESSSVG RSAPDRLVST ATLKVTIAGG  300
GAAHSFRHAL DARLHDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131146KRKDRAKTVVLERKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826116.12e-94transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like isoform X2
TrEMBLA0A2S3I6T67e-93A0A2S3I6T6_9POAL; Uncharacterized protein
STRINGPavir.Ga01979.1.p1e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057