PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00376.1.g00180.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 318aa    MW: 34245.5 Da    PI: 5.5319
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00376.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-17177224555
                           AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   GVr ++ +g+++AeIrd + ng   r+++g+f+t+e Aa a+++a+ +++g
  Zmw_sc00376.1.g00180.1.sm.mk 177 GVRKRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRG 224
                                   9*****.**********44465..*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.18174232IPR001471AP2/ERF domain
PRINTSPR003674.8E-10175186IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-21176234IPR016177DNA-binding domain
SMARTSM003801.2E-31177238IPR001471AP2/ERF domain
PfamPF008472.9E-12177224IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-27177233IPR001471AP2/ERF domain
CDDcd000182.87E-15177233No hitNo description
PRINTSPR003674.8E-10214234IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEPQFGNGLY YGNVTYAREE QGYSFTCYDE TSYSDNMAAT GLYQPSSICA SQQYGGGGYN  60
HQSSSPAEWI SSSSMSSAYS HHHSYQQQIH FGGGVDEYYG CKVEEAMGAV DMDHVSALMG  120
AASISKTTSD GSSASGTYAP ESCWTTEHHG EAFAASRSSS ATTDGSNGSG DDAPLIGVRK  180
RPWGKYAAEI RDSTRNGERV WIGTFDTPEA AALAYDQAAY SMRGPSAVLN FPVRHVHETL  240
RELGLSGGAA AGDSPALVLK RRHCIRKRSP KTKKVAGEEQ RMATSRGHGK QMQSASCVLE  300
LEDLGPDYLE ELLALSYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-261772321772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259273KRRHCIRKRSPKTKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959050.11e-82ethylene-responsive transcription factor 1
TrEMBLC5XCK58e-93C5XCK5_SORBI; Uncharacterized protein
STRINGSb02g005840.11e-93(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249