PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00366.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 310aa MW: 34703.2 Da PI: 7.2142 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.7 | 3.2e-18 | 242 | 276 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C ++kTp+WR gp g+ktLCnaCG+++++ +l Zmw_sc00366.1.g00080.1.sm.mkhc 242 CAHCMSSKTPQWRAGPLGPKTLCNACGVRFKSGRL 276 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 0.02 | 154 | 204 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.28E-5 | 157 | 194 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.8E-6 | 159 | 187 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 3.0E-13 | 236 | 290 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.9E-14 | 240 | 274 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.57E-13 | 240 | 299 | No hit | No description |
PROSITE profile | PS50114 | 10.963 | 240 | 272 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.1E-16 | 242 | 276 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 242 | 267 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 3.56E-12 | 242 | 298 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MDLQSANAAA DSLGDLYLHQ AALESDDSNP DWLHIYEKDR FSSSASFPNP VSGKPITTMA 60 DQSAGNPMLL TSSYSNGRQR KRSLASVLSD DDDQYTIPLV IEPPLLLMDQ KHWMAESELI 120 PPQKEKDQEL CQQQGQEYEE LECEEGELTQ LPGEQLLKRC NSCLSCHAPT WRHGPSDFKM 180 LCNACSPKVK PENRVTTASK KQCGLGTNKK QEQGKQGDKK MIKKIANASE RELPEEPLMR 240 MCAHCMSSKT PQWRAGPLGP KTLCNACGVR FKSGRLLPEY RPANSPTFES HVHSNSHKKV 300 LQLRQADRHN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021321879.1 | 1e-119 | GATA transcription factor 4 | ||||
TrEMBL | A0A0A8XNM8 | 1e-128 | A0A0A8XNM8_ARUDO; GATA transcription factor | ||||
STRING | Si022727m | 1e-118 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5962 | 36 | 56 |