PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00364.1.g00350.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 824aa    MW: 88958.3 Da    PI: 10.9253
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00364.1.g00350.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.6e-31758816259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                    D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Zmw_sc00364.1.g00350.1.am.mk 758 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 816
                                   69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-12713755IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.5E-33745816IPR003657WRKY domain
PROSITE profilePS5081129.987752818IPR003657WRKY domain
SuperFamilySSF1182902.35E-26755816IPR003657WRKY domain
SMARTSM007742.5E-38757817IPR003657WRKY domain
PfamPF031062.4E-26759815IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MALCDQRTEA DQFVPRGPSD HSDMMPPSLR LSISAVACRH PHDRSNDRCA RASNPQTPDG  60
FGEFAHLDAT RSRHADVVDA LAATPRTSPC SALRPAGSEL YVAIATSTTS RRRRRRGRQV  120
RGGKVATTTH YKTISTVRAR AALPASNAGA CSGGWIGLDS VFVTRGWHLR VLNKQMLSYR  180
GQGFPGPANE GEARCDDWVH PTASVAVEAV GPRLPLVERI FCGAAFLIPD RLLLLHTDAN  240
VAQQQPQPQI ADPNAYLDDC KRGTAIATAT VHTFDETAAS PEPQIPIPWP KNKNRPRKKS  300
MRKTRTAAII SGPHPWLPPH RSLHSASESA WTAAAAAAAS ACFFFACPPG REKRLSPPPL  360
WSRLSSPVRR ERGRRGLAWA LRGSARSPAP VLLVGGPVPR SRLLHERPSV SVGQLRSALA  420
AICWWSRWKA PSMEGMEEAN RAAVQSCHRV LALLSEPQGQ LDLNKDLAAA TGEAVSKFGS  480
LTSKLANGNG RQGHARVRKV KKPLAIIDGN LFLESPAVAA ADAAAAAKTP KPSPITGLQL  540
FPRYQQQGEG SSSKEPVRIP AQFPKRLLLE NPAVDLEGPS LAPPLRLVHP VSVAPPAGTP  600
HSALPAAHLQ FIQQHQSYQR YQFMQQMRIQ GEMMRRSSLG DQGQGGSGSA AAGKGVNLKF  660
DGSNCTASSS RSFLSSLSME GSLASLEASR ASRSFQLVNG SQTASTPELG GQRRRCTGKA  720
DGSGRCATRC HCAKKRKLRI RRSIKVPAIS NKVADIPADE FSWRKYGQKP IKGSPHPRGY  780
YKCSSVRGCP ARKHVERCVD DPSMLIVTYE GDHNHNRALA QPAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-197558161272WRKY transcription factor 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110117RRRRRRGR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242