PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00363.1.g00330.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 865aa MW: 92416.9 Da PI: 11.4547

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00363.1.g00330.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.6	2e-33	589	707	3	125
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec..eae 76 g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a ai l+ + + e++ Zmw_sc00363.1.g00330.1.am.mk 589 GGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAAAGAIERLPALdpaafA------AapEPG 663 78*************************************************************444330......233233 PP TCP 77 sssssasnsssgkaaksaakskksqksaasalnlak.esrakarararer 125 + + ++ s + s+ s++s+ s l+l++ +sr + +r+r Zmw_sc00363.1.g00330.1.am.mk 664 EAATKRQQGSV------SGGSSTSETSKGSELSLSRsDSRGGGASASRDR 707 33332221111......122233333333334444444443333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.0E-33	590	701	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.452	590	648	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 865 aa Download sequence Send to blast
MRRSARAPDP DKVESSRARS AQAAFVAFSH RVSVMRRVHD LDCMLRRCRR RGGAVGISSC 60 SRATGSCSSL VSRRRVRVKR HADSGTVAAE SGAVIEPVPS LPRENREKHV WNQHLSTCSI 120 HPSTSSRNVS PGATNGGRTS GGYRPAISAR VFTRPLTATA WSQDPLGRPP FLRQDAGRHA 180 AARLSTGHLP DATQIPRPIV LTAEERKRAI SLRCWRCTLH CCCCVLTCNM EMLVTRLQEG 240 GEAAAGGDCQ INGGDRRTAG SSEATCAFRF PAHISSMPPS LPASSSTARS EGWMSATPPS 300 NEPPVAAKVA IIEGHQGHAR FAMRPPAVKR PVEEQLKKKT VGAPAAAGSR YARHGSKRRT 360 PATSPSTVAI PTHPTDRLTD ECARAVQRRR RCRSQTALAV GPSEAFRRRC FPLLSAAFAS 420 PQRPAREQTQ SVSDSGWQCA PQETATKRWH EPFTAFEQQQ GRRGRRAPTR RQKQGHPPGV 480 AVATHISAAA AAAALLWHRI DRNRQAPPVH RSSSIKTPHF YERLRRAGME NGAAGDGASG 540 RPHGGAKRGR GGVMRGSETE TAWGQPPALP PPPQGAGTAS RICRVGRGGG KDRHSKVYTA 600 KGIRDRRVRL SVPTAIQFYD LQDRLGFDQP SKAIEWLINA AAGAIERLPA LDPAAFAAAP 660 EPGEAATKRQ QGSVSGGSST SETSKGSELS LSRSDSRGGG ASASRDRDVT VASTSTQAAS 720 FTELLTGAAE HRQAWQPQPN VSAAVAHTEK GANGLSTHVF SAPTVVKFGN APPFGMVPAQ 780 PLNFPTPDAL AASSAPAGDY NLNFSMSSGH HHQQLQRLEG QFLFGYAAAA AAAAHPSSEN 840 QLNASAAIQL WDGFRHPGMK EKSKN

Sequence ? help Back to Top

Protein Sequence Length: 865 aa Download sequence Send to blast

MRRSARAPDP DKVESSRARS AQAAFVAFSH RVSVMRRVHD LDCMLRRCRR RGGAVGISSC  60
SRATGSCSSL VSRRRVRVKR HADSGTVAAE SGAVIEPVPS LPRENREKHV WNQHLSTCSI  120
HPSTSSRNVS PGATNGGRTS GGYRPAISAR VFTRPLTATA WSQDPLGRPP FLRQDAGRHA  180
AARLSTGHLP DATQIPRPIV LTAEERKRAI SLRCWRCTLH CCCCVLTCNM EMLVTRLQEG  240
GEAAAGGDCQ INGGDRRTAG SSEATCAFRF PAHISSMPPS LPASSSTARS EGWMSATPPS  300
NEPPVAAKVA IIEGHQGHAR FAMRPPAVKR PVEEQLKKKT VGAPAAAGSR YARHGSKRRT  360
PATSPSTVAI PTHPTDRLTD ECARAVQRRR RCRSQTALAV GPSEAFRRRC FPLLSAAFAS  420
PQRPAREQTQ SVSDSGWQCA PQETATKRWH EPFTAFEQQQ GRRGRRAPTR RQKQGHPPGV  480
AVATHISAAA AAAALLWHRI DRNRQAPPVH RSSSIKTPHF YERLRRAGME NGAAGDGASG  540
RPHGGAKRGR GGVMRGSETE TAWGQPPALP PPPQGAGTAS RICRVGRGGG KDRHSKVYTA  600
KGIRDRRVRL SVPTAIQFYD LQDRLGFDQP SKAIEWLINA AAGAIERLPA LDPAAFAAAP  660
EPGEAATKRQ QGSVSGGSST SETSKGSELS LSRSDSRGGG ASASRDRDVT VASTSTQAAS  720
FTELLTGAAE HRQAWQPQPN VSAAVAHTEK GANGLSTHVF SAPTVVKFGN APPFGMVPAQ  780
PLNFPTPDAL AASSAPAGDY NLNFSMSSGH HHQQLQRLEG QFLFGYAAAA AAAAHPSSEN  840
QLNASAAIQL WDGFRHPGMK EKSKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-23	595	649	1	55	Putative transcription factor PCF6
5zkt_B	1e-23	595	649	1	55	Putative transcription factor PCF6

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3094	32	71