PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00359.1.g00230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 325aa MW: 33785.8 Da PI: 6.0236 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.3e-08 | 234 | 254 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++ar G+Ck G++C+F Hg Zmw_sc00359.1.g00230.1.sm.mk 234 PCLYYAR-GFCKNGSSCRFVHG 254 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.88E-5 | 232 | 254 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-5 | 233 | 254 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.253 | 234 | 256 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-5 | 234 | 254 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MDAYEATKVV FSRIQALDPD HAAKIMGLLL IQDHGEKEMI RLAFGPESLL HAVMAKARKD 60 LGLLLPASPT SVAAAGHAPF LQLPRQSSGR AGAGAPSPLS VSSPSSWAQA PAFSRSNNGS 120 NGSTEDAAGV DGEELPSPVN GGAAPFFPQG RDALLEDMQL PEQLAFLNEG GVNPAHQFPS 180 FDGGECPSPG PGDGGGPFQY GLGWPNGGPA HRRSASVNEL CLGGGGADGF VWKPCLYYAR 240 GFCKNGSSCR FVHGGLPDDA AALSSTRMDA ADQQQQHCQD FLLRSKSQLL GPAAFPYSPT 300 GSLPGSPSAA GKCLSLLLQQ QQHDR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002467925.1 | 1e-163 | zinc finger CCCH domain-containing protein 22 isoform X1 | ||||
Refseq | XP_021311470.1 | 1e-163 | zinc finger CCCH domain-containing protein 22 isoform X2 | ||||
Swissprot | Q10M00 | 1e-151 | C3H22_ORYSJ; Zinc finger CCCH domain-containing protein 22 | ||||
TrEMBL | A0A3L6TFW3 | 1e-171 | A0A3L6TFW3_PANMI; Zinc finger CCCH domain-containing protein 22-like | ||||
STRING | Sb01g036490.1 | 1e-162 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1433 | 11 | 15 |
Publications ? help Back to Top | |||
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