PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00355.1.g00480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 246aa MW: 27969.9 Da PI: 8.321 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 29.2 | 3.1e-09 | 103 | 164 | 2 | 73 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 +Yn ++ e GF +r ++++++++ + ++k+++vC ++g++ k+ + r+gCka++++++++d Zmw_sc00355.1.g00480.1.sm.mk 103 YYNLHSWEKGFVIRCNSNETNRN-NYVMKKELVCMCQGQPGAGIKT---------SIRCGCKARMVLRRTDD 164 8***************9999955.55**************999888.........99**********99875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-6 | 103 | 164 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MCLGLAQKSA TVVIEITEEA RMDDNTSEEI DTAVGTCVAP CTTWAIVRHR KLGVNGPSSR 60 APVVGRRSAI EEALLSFKDR AAECVNAPAV GITFDSYEEG FHYYNLHSWE KGFVIRCNSN 120 ETNRNNYVMK KELVCMCQGQ PGAGIKTSIR CGCKARMVLR RTDDHGFPNR NFRIYAERSM 180 WAKLYFAEVF YAGQTSTQRS ENANHMLKNK VPPDALMHVF VRQYMKLLSQ RIEEEDFEER 240 RSKLGH |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |