PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00347.1.g00450.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 332aa MW: 34981.4 Da PI: 9.3932

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00347.1.g00450.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.2	5.3e-07	245	277	6	42
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKae 42 +++Er RR ri +++ +L+el+P+ + k ++K + Zmw_sc00347.1.g00450.1.sm.mkhc 245 SIAERERRTRISEKLRKLQELVPNmD-----KPPNKLS 277 689*********************55.....4455544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.07E-7	242	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.13E-5	243	279	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.9E-6	244	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-4	245	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MRRFMPGSGG VEPSSSPSSG GQQRHHQHGE RGGDTAAAGG LRYGGGDISL GHGHDGRLPQ 60 LGVDSAGRNE DRQQDGSMDM LARHSSSPAG FFSNLVMDNG YPSSKGAGGS GAEPHHHPSK 120 ASNVNSRKIN FTRQQQQGAA SGHLSQISEL DGGAFPPGLS AGGRSSGESS GAASRSFSGG 180 FSIVGPWEES REIIATLGAY DPQFSGAMAG SALEMAGMDR YLQLQQDQVP FKVRAKRGCA 240 THPRSIAERE RRTRISEKLR KLQELVPNMD KPPNKLSTAN QRNVPDGTAN EHSGHVGPCS 300 GAHQGSAERA ADSEARAREV YLLQKAMTVA TY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808991.1	1e-100	transcription factor bHLH128-like
TrEMBL	A0A1E5USQ6	1e-100	A0A1E5USQ6_9POAL; Transcription factor bHLH128
STRING	Pavir.Aa01423.1.p	1e-97	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11531	31	41