PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00344.1.g00330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | E2F/DP | ||||||||
Protein Properties | Length: 390aa MW: 43104.6 Da PI: 7.3881 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 71.5 | 9.2e-23 | 49 | 114 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++f++l+ +++ ++v l+++ak+L v +rRRiYDi+NVLe+++++ +++kn++ w g Zmw_sc00344.1.g00330.1.sm.mkhc 49 RKQKSLGLLCSNFVALYDREDVEAVGLDDAAKRL---GV--ERRRIYDIVNVLESVGILVRRAKNRYAWLG 114 79****************9999************...**..****************************87 PP | |||||||
2 | E2F_TDP | 71.8 | 7.4e-23 | 186 | 252 | 1 | 62 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliekk 62 rkeksL+lltq+f+kl+ + e ++++l+e+a+ L+ e ++++k+RR+YDi+NVL++lnliek Zmw_sc00344.1.g00330.1.sm.mkhc 186 RKEKSLGLLTQNFVKLFLTMEVETISLDEAARLLLGEghaesNMRTKVRRLYDIANVLSSLNLIEKA 252 79****************************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.6E-25 | 45 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.43E-16 | 48 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 4.2E-27 | 49 | 114 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.4E-20 | 50 | 114 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.2E-19 | 183 | 252 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.45E-10 | 186 | 252 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.2E-24 | 186 | 260 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.3E-17 | 187 | 252 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MDAAAAAAVA GPSSSSGAGA SAQPQPTVPQ AAVQGAAASK SCRHHAYSRK QKSLGLLCSN 60 FVALYDREDV EAVGLDDAAK RLGVERRRIY DIVNVLESVG ILVRRAKNRY AWLGFGGVPA 120 ALKELKVSFE IPVIFSCHCE VASDDEDDDK LGDADEDDES EKLSQSVDNL SDKPGALPCR 180 LRSDHRKEKS LGLLTQNFVK LFLTMEVETI SLDEAARLLL GEGHAESNMR TKVRRLYDIA 240 NVLSSLNLIE KAFERQLGQG SRSDFVYGPF HPSGAKKQEI GDHLVREERK SIQDWENLAV 300 TFRPQYQNQV MTNGHFYPHV ANRKEHSFLD RSAPIRLDSP TVGSGTRSRC LRLQHQFGHH 360 LTRVIEERAL DMSSTTSRRI LLVEGRAVVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 6e-36 | 48 | 252 | 3 | 222 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002436789.1 | 1e-125 | E2F transcription factor-like E2FE isoform X2 | ||||
Swissprot | Q8LSZ4 | 3e-72 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A0D9WNU1 | 1e-124 | A0A0D9WNU1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G08240.1 | 1e-125 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3185 | 38 | 84 |
Publications ? help Back to Top | |||
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