PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00335.1.g00140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 29909.6 Da PI: 4.3047 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 34 | 85 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y GVr+++ +gr++AeIrdp + + r++lg+f+taeeAa a+++a+++l+g+ Zmw_sc00335.1.g00140.1.am.mk 34 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 85 5799******.**********843...4*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.60E-28 | 34 | 93 | No hit | No description |
SuperFamily | SSF54171 | 4.51E-21 | 35 | 92 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-32 | 35 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-10 | 35 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.562 | 35 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-28 | 35 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MNFSSYFFSS SSDKKPSSKR RQQQQPSAPD ANTTRYLGVR RRPWGRYAAE IRDPATKERH 60 WLGTFDTAEE AAVAYDRAAR SLRGARARTN FAYPDLPPGS SITPYLSPDL TSGDVNSAQL 120 LQPFYADPAA AAAALPNPAA NGALLQPFYA DPAAAAAALP NPAANGAVKD DYEYGYGAYG 180 DADMASLMDD IAFPDDLSAM GGDSGSSMMD MSSAYGSGGG ASAGAGGGWC DASELGGYGA 240 STTTASGAHG VYFEEGYVHS PLFSPMPAVD DACADGFQLG GSSSYYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-18 | 31 | 91 | 1 | 62 | ATERF1 |
3gcc_A | 8e-18 | 31 | 91 | 1 | 62 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975472.1 | 1e-109 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | K3YEC4 | 1e-107 | K3YEC4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Gb01913.1.p | 1e-115 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |