PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00325.1.g00220.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 219aa MW: 23002.2 Da PI: 7.549

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00325.1.g00220.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.3	2.3e-31	123	181	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v++tYeg+Hnh Zmw_sc00325.1.g00220.1.sm.mkhc 123 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDRDDPTYVVTTYEGTHNHV 181 59********************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.6E-33	110	183	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-28	115	183	IPR003657	WRKY domain
PROSITE profile	PS50811	31.766	118	183	IPR003657	WRKY domain
SMART	SM00774	3.0E-35	123	182	IPR003657	WRKY domain
Pfam	PF03106	1.0E-24	124	180	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MAAVGARPVL YHSAAGDEAS SMSSYFSRGG SSTSSSASSF SAALAPAPPP DPAAQFDISE 60 FFDDVAQGVF GCPPHAVDAT STAHVVPADS GAAAAGAGGQ SAANARSAAE RIAFRMRSEI 120 EVLDDGYKWR KYGKKSVKNS PNPRNYYRCS TEGCNVKKRV ERDRDDPTYV VTTYEGTHNH 180 VSPSTVYYAS QDAASGRFFV AGTQPPPAGR PFPSSASSW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-25	118	184	12	78	Probable WRKY transcription factor 4
2lex_A	2e-25	118	184	12	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002440147.1	1e-81	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	8e-41	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	C5YUJ2	2e-80	C5YUJ2_SORBI; Uncharacterized protein
STRING	Sb09g026830.1	4e-81	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]