PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00324.1.g00300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 432aa MW: 47747.7 Da PI: 8.5407 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.4 | 4e-14 | 147 | 194 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv + G +W+++++ g+ R++k+c++rw +yl Zmw_sc00324.1.g00300.1.am.mk 147 KGPWTADEDQKLVSFILGNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 194 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 45.9 | 1.3e-14 | 204 | 268 | 5 | 47 |
-HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqky 47 ++ E++l vd+++qlG++ W++Ia++++ gRt++++k++w+++ Zmw_sc00324.1.g00300.1.am.mk 204 SEAEEKLVVDLHAQLGNRchahatprfilltellsfrcstrEWSKIASRLP-GRTDNEIKNHWNTH 268 899************************************************.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-19 | 138 | 196 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.633 | 142 | 198 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-10 | 146 | 196 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.79E-21 | 147 | 198 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-12 | 147 | 194 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.47E-8 | 149 | 194 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-20 | 197 | 273 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-10 | 199 | 271 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 12.246 | 199 | 273 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.0E-11 | 203 | 268 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-8 | 204 | 269 | No hit | No description |
SuperFamily | SSF46689 | 2.79E-21 | 241 | 270 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MGQLRRTADP GNRREVRGEG RASLPERSRQ RRGHIASGKA GLAGSTSEKK RPFCDGECRF 60 CRLALVASGF REPCVFADLV IDDLHVVSCL TRPVPCSSPP LLPYKGSQFL ITCVSEQRGV 120 FSVLDQKLTS QLKMGRQPCC DKVGLKKGPW TADEDQKLVS FILGNGHCCW RAVPKLAGLL 180 RCGKSCRLRW TNYLRPDLKR GLLSEAEEKL VVDLHAQLGN RCHAHATPRF ILLTELLSFR 240 CSTREWSKIA SRLPGRTDNE IKNHWNTHIK KKLRKMGIDP VTHKPLLQPT QLQQLSPAEA 300 RPPTPERQRQ PKPNTVPAEA ATRSSSQNDK EEHPPLLSKS PGFCTDEVPM MHPDEITMLS 360 PCNDDQPAEP ASISTPTTSH SAASASSSCD KEATLFPAMD EWPDTLSLVG LDDMMIAAPP 420 SPWDEYPVAA GS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 145 | 273 | 5 | 108 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572214.1 | 1e-101 | transcription factor MYB20 | ||||
Swissprot | Q50EX6 | 9e-79 | ODO1_PETHY; Protein ODORANT1 | ||||
TrEMBL | I1I777 | 1e-100 | I1I777_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G36370.1 | 1e-101 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Publications ? help Back to Top | |||
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