PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00324.1.g00300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 432aa    MW: 47747.7 Da    PI: 8.5407
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00324.1.g00300.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.44e-14147194148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT++Ed++lv  +   G  +W+++++  g+ R++k+c++rw +yl
  Zmw_sc00324.1.g00300.1.am.mk 147 KGPWTADEDQKLVSFILGNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 194
                                   79******************************99************97 PP

2Myb_DNA-binding45.91.3e-14204268547
                                   -HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   5 TteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqky 47 
                                   ++ E++l vd+++qlG++                        W++Ia++++ gRt++++k++w+++
  Zmw_sc00324.1.g00300.1.am.mk 204 SEAEEKLVVDLHAQLGNRchahatprfilltellsfrcstrEWSKIASRLP-GRTDNEIKNHWNTH 268
                                   899************************************************.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-19138196IPR009057Homeodomain-like
PROSITE profilePS5129419.633142198IPR017930Myb domain
SMARTSM007172.6E-10146196IPR001005SANT/Myb domain
SuperFamilySSF466892.79E-21147198IPR009057Homeodomain-like
PfamPF002491.3E-12147194IPR001005SANT/Myb domain
CDDcd001674.47E-8149194No hitNo description
Gene3DG3DSA:1.10.10.603.1E-20197273IPR009057Homeodomain-like
SMARTSM007171.5E-10199271IPR001005SANT/Myb domain
PROSITE profilePS5129412.246199273IPR017930Myb domain
PfamPF002492.0E-11203268IPR001005SANT/Myb domain
CDDcd001671.01E-8204269No hitNo description
SuperFamilySSF466892.79E-21241270IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MGQLRRTADP GNRREVRGEG RASLPERSRQ RRGHIASGKA GLAGSTSEKK RPFCDGECRF  60
CRLALVASGF REPCVFADLV IDDLHVVSCL TRPVPCSSPP LLPYKGSQFL ITCVSEQRGV  120
FSVLDQKLTS QLKMGRQPCC DKVGLKKGPW TADEDQKLVS FILGNGHCCW RAVPKLAGLL  180
RCGKSCRLRW TNYLRPDLKR GLLSEAEEKL VVDLHAQLGN RCHAHATPRF ILLTELLSFR  240
CSTREWSKIA SRLPGRTDNE IKNHWNTHIK KKLRKMGIDP VTHKPLLQPT QLQQLSPAEA  300
RPPTPERQRQ PKPNTVPAEA ATRSSSQNDK EEHPPLLSKS PGFCTDEVPM MHPDEITMLS  360
PCNDDQPAEP ASISTPTTSH SAASASSSCD KEATLFPAMD EWPDTLSLVG LDDMMIAAPP  420
SPWDEYPVAA GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-231452735108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572214.11e-101transcription factor MYB20
SwissprotQ50EX69e-79ODO1_PETHY; Protein ODORANT1
TrEMBLI1I7771e-100I1I777_BRADI; Uncharacterized protein
STRINGBRADI3G36370.11e-101(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]