PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00322.1.g00280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 292aa MW: 30702.3 Da PI: 7.9371 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.4 | 6e-32 | 68 | 121 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++rY+eClkNhA+ +GghavDGCgEfm++ geeg+++al+CaACgCHRnFHR+e+ Zmw_sc00322.1.g00280.1.am.mk 68 TTRYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSINALRCAACGCHRNFHRKES 121 579*************************9.999********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.0E-29 | 69 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.7E-29 | 70 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-24 | 70 | 123 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.735 | 71 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.31E-21 | 217 | 288 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.8E-33 | 218 | 288 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.4E-27 | 227 | 283 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MDFDEHDDGD EEMPPMPVSS SYDAPMQPGI VQGGSGSTPK PADSGGGGSF STPGGGSGGV 60 GGRAGGGTTR YRECLKNHAV GIGGHAVDGC GEFMAAGEEG SINALRCAAC GCHRNFHRKE 120 SGSPTGAEPV ALSPAAITPY GVAAPHQFSP YYRTPAGYLY HQQQHQQHLA AAAAAGHMHR 180 PLALPSTSHS GGRDEGDDIS RMIGPMVVAP MVGMSLSSGG GASGSGKKRF RTKFTQEQKD 240 RMLAFAERLG WRIQKHDEAA VQQFCEEVGV KRQVLKVWMH NNKHTLGRKP LP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-30 | 228 | 285 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 66 | GGRAGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149424.2 | 1e-141 | uncharacterized protein LOC100283050 | ||||
Swissprot | A2YWA6 | 1e-120 | ZHD2_ORYSI; Zinc-finger homeodomain protein 2 | ||||
Swissprot | Q6ZB90 | 1e-120 | ZHD2_ORYSJ; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A1D6KLI5 | 1e-140 | A0A1D6KLI5_MAIZE; ZF-HD protein dimerization region containing protein | ||||
TrEMBL | A0A317YC70 | 1e-140 | A0A317YC70_MAIZE; Zinc-finger homeodomain protein 2 | ||||
STRING | GRMZM2G346920_P01 | 1e-141 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3950 | 32 | 69 |
Publications ? help Back to Top | |||
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