PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00320.1.g00430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 180aa MW: 20084 Da PI: 9.7929 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.2e-18 | 92 | 139 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l Zmw_sc00320.1.g00430.1.am.mk 92 KGPWTSAEDSILVDYVKKHGEGNWNAVQKNTGLSRCGKSCRLRWANHL 139 79******************************************9996 PP | |||||||
2 | Myb_DNA-binding | 24.4 | 6.8e-08 | 145 | 174 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g++T++E+ l+++++ ++G++ W++ a+++ Zmw_sc00320.1.g00430.1.am.mk 145 KGAFTPDEERLIIQLHSKMGNK-WARMAAHV 174 799*******************.*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.31 | 87 | 143 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 88 | 142 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.92E-25 | 89 | 174 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-15 | 91 | 141 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-16 | 92 | 139 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.05E-12 | 94 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-14 | 143 | 174 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.94 | 144 | 180 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.918 | 144 | 180 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.7E-7 | 145 | 174 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.93E-4 | 147 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MRPRPIACLL WRSEILLRFP LLSSPSFQQS AAELTRAGEP LVELNSAHPG LDRLRRLRDS 60 SESDCEMVPL DQMDSPAADD GGSPHRGPPL KKGPWTSAED SILVDYVKKH GEGNWNAVQK 120 NTGLSRCGKS CRLRWANHLR PNLKKGAFTP DEERLIIQLH SKMGNKWARM AAHVSAMLIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-21 | 87 | 171 | 22 | 105 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564452.1 | 4e-68 | transcription factor GAMYB | ||||
Swissprot | A2WW87 | 2e-67 | GAM1_ORYSI; Transcription factor GAMYB | ||||
TrEMBL | A0A0C6WCK4 | 4e-68 | A0A0C6WCK4_9POAL; ScMYB9 protein | ||||
TrEMBL | I1HSP4 | 9e-67 | I1HSP4_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G53010.1 | 1e-67 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3947 | 36 | 64 |