PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00310.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 147aa MW: 17349.9 Da PI: 9.7194 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.1 | 1.9e-45 | 16 | 132 | 1 | 117 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 + pGfrFhPtdeel+ +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g Zmw_sc00310.1.g00050.1.sm.mk 16 MLPGFRFHPTDEELIGFYLKRKIQHKSLPI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTGAG 95 579***************************.89***************9888999************************** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkge 117 +Wkatg+d++++s+ +++ +glkk+Lvfykgra kg Zmw_sc00310.1.g00050.1.sm.mk 96 FWKATGTDRPIYSSdGSKCIGLKKSLVFYKGRAAKGY 132 *************966677**************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.02E-48 | 12 | 132 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.541 | 16 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-21 | 18 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MDEIRSDDME KQEEVMLPGF RFHPTDEELI GFYLKRKIQH KSLPIELIRQ LDIYKYDPWD 60 LPKLASTGEK EWYFYCPRDR KYRNSTRPNR VTGAGFWKAT GTDRPIYSSD GSKCIGLKKS 120 LVFYKGRAAK GYTKKSALLR EHIVYND |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-44 | 4 | 131 | 3 | 128 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022679437.1 | 1e-90 | putative NAC domain-containing protein 94 | ||||
Swissprot | Q9ZVH0 | 2e-78 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | K3YYF7 | 2e-89 | K3YYF7_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ab02998.1.p | 4e-90 | (Panicum virgatum) | ||||
STRING | Si019308m | 4e-90 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3366 | 38 | 82 |
Publications ? help Back to Top | |||
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