PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00309.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 522aa    MW: 55803.9 Da    PI: 8.8393
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00309.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.1e-13189239255
                                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   ++ h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Zmw_sc00309.1.g00170.1.am.mk 189 KMLHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 239
                                   57799***********************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.38E-13185243No hitNo description
PROSITE profilePS5088815.046187238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-12189251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-16189260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-11193244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MSPGWQFIEC PLPCCIGAVT LLRPAAALAP PAAFIILPGQ ARAGCAHNQY TGSTTHTRRS  60
RSSRQAYVLL RRAPHFRPMG DGPCELLVDG RCDRLRHVSD AEDLFSILRT WEECTNGVPG  120
GASAAESASA FRQTCTGGPV AAVGRPSTTG SSRRRSSVAD EDKVGGAPMQ KKQKGAAPPA  180
LDDDDGVAKM LHIAVERNRR KQMNEHLAVL RSLMPCFYVK RGDQASIIGG VVDYIKELQQ  240
VLRLLEAKKD RKAYADQVLS PRPGAGASPR PLVKSTPPIS PRLAVPISPR TPSRPGSPYN  300
LPSCGAGGRL PHPAAAAYMM ATSPAVTPTP TSSSWCSSCN HSWHDYQQQN YPPQPQYLPT  360
LDSIVTELVA HASASRPALV PDVKVEFAGP NLVLKTVSHR APGQALKIIA ALESLSLEIL  420
HVSVSTVDET MVHSFTIKIG IECELSAEEL VQEIQRTFYP RQPSPLAAPQ SLVVAAFATA  480
ILSLPASGVP HPNPSYKPGI QRSLPGNPSL TPKGCEVDLN VD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152173RRRSSVADEDKVGGAPMQKKQK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799200.11e-154transcription factor SPEECHLESS-like
TrEMBLA0A3L6QHE71e-155A0A3L6QHE7_PANMI; Transcription factor SPEECHLESS-like
STRINGPavir.Ab01030.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577