PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00309.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 270aa MW: 29809.7 Da PI: 7.6793

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00309.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.5	1.9e-12	158	183	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Zmw_sc00309.1.g00120.1.sm.mkhc 158 YQPDICKDYKETGYCGYGDSCKFMHD 183 67789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	9.42E-10	156	190	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.878	157	185	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-7	157	184	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-10	158	183	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.4E-13	158	188	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MLARITNALP ALLRPGNHPK NIRKRPAAPT DSDDEDGGGG DIAALLSKKG PSAPGKFVFS 60 STDGSGEPRL HGQPRHRHRH RHPRDGDGLK QAEETLKKNP SASSSASGSG EVYKGIHGYT 120 DYKAGFRREH TVSSEKAGGS HGPLRASAHI RVSARFDYQP DICKDYKETG YCGYGDSCKF 180 MHDRGDYKSW WQLEKEYEEA EKARKRRIAM GGGDGSDDEA AEDDDDDDDE EAHHSKNKKC 240 FVCNKPTLGI FNAAQEIRRK MAQDKQQQDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	1e-28	111	270	151	326	RING finger protein 113A
5z58_M	1e-28	111	270	151	326	RING finger protein 113A
6ff4_t	1e-28	111	270	151	326	RING finger protein 113A
6ff7_t	1e-28	111	270	151	326	RING finger protein 113A
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156391.1	1e-108	zinc finger CCCH domain-containing protein 15
Swissprot	Q6K4V3	2e-91	C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBL	F2DBY5	1e-106	F2DBY5_HORVV; Predicted protein
STRING	Traes_4AS_866E12EE7.1	1e-107	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8071	36	45

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]