PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00308.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 357aa MW: 38234.3 Da PI: 10.5678

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00308.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.7	1.7e-31	291	348	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh Zmw_sc00308.1.g00060.1.sm.mkhc 291 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPTMLIVTYEGEHNHA 348 9***********************988**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	9.3E-17	241	287	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.6E-34	277	350	IPR003657	WRKY domain
PROSITE profile	PS50811	31.491	284	350	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-27	287	350	IPR003657	WRKY domain
SMART	SM00774	4.8E-38	289	349	IPR003657	WRKY domain
Pfam	PF03106	4.4E-27	291	347	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MEAVEVANRA AVESCHRVLA LLSQSEQQDP ALRRSVASET GEACAKLRKV VALLGDTGGS 60 GHARGRFSRR GGPTGFLSQK GFLGSGGGAS LETTPSGSAT APSNSYAQLR ARINAASEYS 120 RGLDVASTSG SPHFGAPKLV QPLSVQFQIG NVAHRYPFPQ QPSARQKLQA EMFKRSNSGI 180 SVKFDSPCPS GATAMMTSSA RSFMSSLSMD GSVVSLEGKR PFHLVGAPAA SDPVDMQREP 240 KRRCVGKGGE DGRGKCAVTG RCHCSKRRKL RNKRSIKVPA ISNKIADIPP DEYSWRKYGQ 300 KPIKGSPHPR GYYKCSSVRG CPARKHVERC VDDPTMLIVT YEGEHNHARP PAQSAQT

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MEAVEVANRA AVESCHRVLA LLSQSEQQDP ALRRSVASET GEACAKLRKV VALLGDTGGS  60
GHARGRFSRR GGPTGFLSQK GFLGSGGGAS LETTPSGSAT APSNSYAQLR ARINAASEYS  120
RGLDVASTSG SPHFGAPKLV QPLSVQFQIG NVAHRYPFPQ QPSARQKLQA EMFKRSNSGI  180
SVKFDSPCPS GATAMMTSSA RSFMSSLSMD GSVVSLEGKR PFHLVGAPAA SDPVDMQREP  240
KRRCVGKGGE DGRGKCAVTG RCHCSKRRKL RNKRSIKVPA ISNKIADIPP DEYSWRKYGQ  300
KPIKGSPHPR GYYKCSSVRG CPARKHVERC VDDPTMLIVT YEGEHNHARP PAQSAQT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	277	352	2	76	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809630.1	0.0	protein WRKY1-like isoform X1
TrEMBL	A0A2T7EIW2	0.0	A0A2T7EIW2_9POAL; Uncharacterized protein
STRING	Pavir.J38176.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87