PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00296.1.g00490.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 280aa MW: 30805.9 Da PI: 4.5059

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00296.1.g00490.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.3e-19	31	83	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le+ Fe +++++ +++++A++lgL+ rqV vWFqNrRa++k Zmw_sc00296.1.g00490.1.sm.mkhc 31 KRRLALEQVRALERSFETDNKLDPGRKARIARELGLQPRQVAVWFQNRRARWK 83 4467789*********************************************9 PP
2	HD-ZIP_I/II	129.4	1.5e-41	29	121	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 ekkrrl+ eqv++LE+sFe+++kL+p rK+++areLglqprqvavWFqnrRAR+ktkqlE+d++aL++++d+l+++ ++ Zmw_sc00296.1.g00490.1.sm.mkhc 29 EKKRRLALEQVRALERSFETDNKLDPGRKARIARELGLQPRQVAVWFQNRRARWKTKQLERDFAALRARHDSLRADCDA 107 69*************************************************************************** PP HD-ZIP_I/II 80 LekeveeLreelke 93 L++++++L++e++e Zmw_sc00296.1.g00490.1.sm.mkhc 108 LHRDKDALAAEIRE 121 *******99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.06E-18	27	87	IPR009057	Homeodomain-like
SMART	SM00389	5.6E-19	28	89	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.52	29	85	IPR001356	Homeobox domain
CDD	cd00086	7.49E-18	30	86	No hit	No description
Pfam	PF00046	3.7E-16	31	83	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-19	37	84	IPR009057	Homeodomain-like
PRINTS	PR00031	1.3E-5	56	65	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	60	83	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	65	81	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.5E-15	85	126	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MEQEETEMDD DEDELADGRA ARSACGLGEK KRRLALEQVR ALERSFETDN KLDPGRKARI 60 ARELGLQPRQ VAVWFQNRRA RWKTKQLERD FAALRARHDS LRADCDALHR DKDALAAEIR 120 ELRQKLSKPE AAVKVEATCN DAVEDRQAAF GTSATIAVYK DGSSDSDSSV VFNDVEASPY 180 SGAVLEQPPQ QAGFVGFGES FMDSSAAATM GCPSFGTKWQ HGSMTYPCDD PYKAGSYGIM 240 EEWLAGSDVI SNDGAAGFFS DEHAPSLNFS WCASVAEGWD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	85	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002465732.1	1e-118	homeobox-leucine zipper protein HOX13 isoform X2
Swissprot	Q10QP3	2e-97	HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13
TrEMBL	A0A0A9PIJ1	1e-129	A0A0A9PIJ1_ARUDO; Uncharacterized protein
STRING	Pavir.Ia04906.1.p	1e-118	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]