PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00293.1.g00120.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 547aa    MW: 59057.3 Da    PI: 10.8373
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00293.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-19227276255
                           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr ++ +gr++AeIrd +     r +r++lg+++t+ eAa a+++a+++l+g
  Zmw_sc00293.1.g00120.1.am.mk 227 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDTPVEAALAYDRAALALRG 276
                                   7********.**********88.....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-12227276IPR001471AP2/ERF domain
SMARTSM003807.7E-33227290IPR001471AP2/ERF domain
PROSITE profilePS5103221.694227284IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21227284IPR016177DNA-binding domain
CDDcd000184.48E-25227283No hitNo description
Gene3DG3DSA:3.30.730.101.5E-28227284IPR001471AP2/ERF domain
PRINTSPR003675.8E-9228239IPR001471AP2/ERF domain
PRINTSPR003675.8E-9250266IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MARHRRGPAS VERRSGTRVR PSRKRAAAPH PTTRLRAPQE PRGAESCSGT SPRETSAPAS  60
RPHEEDTGAL VSGGGIESTA PRSGTPREDS LHRWAGRGRQ CTGLGAQFGR AVRHGVTGRG  120
VVSSVLCRCL LLLRAVGLAS QRQADRCAKP GLRSTGRRDH SLERVRSRKA SNRAAAGLSP  180
DAVRAAGHHP HGSVAGAVAD GGGGATSSVA PAAVVGADQH QQLRGEHYRG VRKRPWGRYA  240
AEIRDPWRKT RVWLGTYDTP VEAALAYDRA ALALRGFKAR TNFGSGSGSG IGRYPPAHQP  300
PRPTPNPVQA FGGLDISQPS PWHFIYVPSR RHQSMETTEP DFDEDVAATL PSTALELRTG  360
PRSLPFDLNE PPSLMFGALT REPQRPRWVD GARHYLVLRA RRLQAPPGLP SFPADDTPSP  420
WASSWRPDRQ PSDKTEQRGD IPNDGDRPDE ERPGGGTDEG IRDGDEPDVD YPDDWLDRAS  480
QRRGAPGAGE PMIEASWLEI NGGSGASGSR GSRQERAERR ARAGRAGGWG LSERNLDTES  540
RLALSDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18224283262ATERF1
3gcc_A1e-18224283262ATERF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465