PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00291.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 532aa    MW: 57793.9 Da    PI: 7.7324
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00291.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08237263530
                                   HHHHHHHHHHHHHHHHHHHHCTSCC.C CS
                           HLH   5 hnerErrRRdriNsafeeLrellPk.a 30 
                                   h + Er+RR+++N++f+ L+++lP+ a
  Zmw_sc00291.1.g00090.1.am.mk 237 HMMSERKRREKLNDSFQALKTVLPPgA 263
                                   8899********************966 PP
2HLH43.84.7e-14289334555
                                   HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   h + Er+RR+++N++f+ L+++lP+ a      K +K +iL +A eYI+sL+
  Zmw_sc00291.1.g00090.1.am.mk 289 HMMSERKRREKLNDSFQALKTVLPPgA------KKDKTSILIRAREYIRSLE 334
                                   8899********************966......99999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.413232290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-7234262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-7235262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-6237263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1238276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.71284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15286350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.08E-13286334No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16288352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-11289334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-13290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MDSSWFHGYA AGNTGFVCGY AASCAPAELQ HEEEDAMLIS SQIQHHLNQI SMHMNMDDEV  60
VYDGALDIQQ QHPAVVDGLL GPQHATSFPS SSSSSSLSLR SGSLSCSPES SAHILGAPGA  120
AAVVGQYPEV SSHVPVPPAV VPYDHQNANV HVPATARELP AASRTAGAFK RYGRHLGPRR  180
QPKPGVCGQR MFKTALSVLS KMHVAASARH SQQYYYYDQA SAAEAAAAAP SVNQLQHMMS  240
ERKRREKLND SFQALKTVLP PGAKQYYYYD QASAAEAAAA APSVNQLQHM MSERKRREKL  300
NDSFQALKTV LPPGAKKDKT SILIRAREYI RSLESKASEL QEKNKALESR LNHRGGNDAK  360
HAAGNAEDSG EKVQIEITRA AKEEHWEMEP RDLCTLKILV HSRCNMTDVV LRTLQCLKDQ  420
AADDDVNLVS MSTSSGVPPH TNSSSPRALL TMQIKSSLGA KWEEQLVKDA VEKVVADAAP  480
TPPSAETAAV ASRLAADHQT TDRKLTSRLV PNIQGAGSVN DWDNSNVPQM RR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292297ERKRRE
2293298RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817328.11e-135putative transcription factor bHLH041
TrEMBLA0A2S3HYL51e-133A0A2S3HYL5_9POAL; Uncharacterized protein
STRINGSi001328m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182