PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00287.1.g00210.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 418aa MW: 45656.3 Da PI: 10.7642

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00287.1.g00210.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	30.8	5.8e-10	282	302	3	23
-SS-EEEEEEE--TT-SS-EE CS WRKY 3 DgynWrKYGqKevkgsefprs 23 D+y+WrKYGqK++kgs++p s Zmw_sc00287.1.g00210.1.sm.mkhc 282 DEYSWRKYGQKPIKGSPHPSS 302 9*****************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.4E-17	232	278	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.3E-9	268	302	IPR003657	WRKY domain
PROSITE profile	PS50811	11.336	275	302	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-7	278	302	IPR003657	WRKY domain
SMART	SM00774	7.4E-5	280	325	IPR003657	WRKY domain
Pfam	PF03106	5.5E-6	282	302	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MEEVEEANRA AVESCHRVLA LLAQPQDPAQ LRSVAKGTDE ACAKFRKVVS LLSNGGVGEA 60 GTSGGSGSHP KAKIASRRHN PGFFTQKSFL DSNTPVVVLN SAQPSPSSAQ VYPRNGALDA 120 QIVNPLGGPP KMVQPLSAHF QFGNVSSRYH FHNQQQQKQK LQTEMFKRSN SGINLKFDSA 180 SGTGTMSSAR SSFLSSLSMD GSVASLDGKS STFHLIGGPA MSDPVNAQQA PRRRCTGHGE 240 DGTGKCAVTG RCHCSKRSRK LRVKRSIKVP AISNKIADIP PDEYSWRKYG QKPIKGSPHP 300 SSSTAHVSIH NKHKKVPKED HLHDIRDGRV HRQGEISRWP RRAYLTSRAS TSTTTTVGAA 360 YLARRRRRSD GRDLDCNDDS GWKVNGFFWR WAMRNLLHAR FGGDLELLER SDADSALA

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MEEVEEANRA AVESCHRVLA LLAQPQDPAQ LRSVAKGTDE ACAKFRKVVS LLSNGGVGEA  60
GTSGGSGSHP KAKIASRRHN PGFFTQKSFL DSNTPVVVLN SAQPSPSSAQ VYPRNGALDA  120
QIVNPLGGPP KMVQPLSAHF QFGNVSSRYH FHNQQQQKQK LQTEMFKRSN SGINLKFDSA  180
SGTGTMSSAR SSFLSSLSMD GSVASLDGKS STFHLIGGPA MSDPVNAQQA PRRRCTGHGE  240
DGTGKCAVTG RCHCSKRSRK LRVKRSIKVP AISNKIADIP PDEYSWRKYG QKPIKGSPHP  300
SSSTAHVSIH NKHKKVPKED HLHDIRDGRV HRQGEISRWP RRAYLTSRAS TSTTTTVGAA  360
YLARRRRRSD GRDLDCNDDS GWKVNGFFWR WAMRNLLHAR FGGDLELLER SDADSALA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795417.1	0.0	protein WRKY1-like isoform X1
TrEMBL	A0A2S3IK15	0.0	A0A2S3IK15_9POAL; Uncharacterized protein
TrEMBL	A0A2T7C3I7	0.0	A0A2T7C3I7_9POAL; Uncharacterized protein
STRING	Pavir.Ia01239.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87