PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00286.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 281aa MW: 29844.3 Da PI: 5.3102

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00286.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.2	1.3e-38	26	126	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C aCk+lrrkCa+dC++ap+f ++q + +fa+vh++FGasnv kll+ lp ++r++a+ ++++eA+ar+rdPvyG+v++i Zmw_sc00286.1.g00170.1.am.mk 26 PCGACKFLRRKCASDCIFAPHFDQDQgAVQFAAVHRVFGASNVAKLLNYLPIDKRTEAVITICFEAQARLRDPVYGCVSHI 106 7***********************89************************************************* PP DUF260 81 lklqqqleqlkaelallkee 100 ++lqqq+ +l++el++++++ Zmw_sc00286.1.g00170.1.am.mk 107 FSLQQQIVNLQSELNYVQNH 126 **************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.32	25	127	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.7E-38	26	124	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MSSSVAGGAA GCGGAGGGSG GGGGGPCGAC KFLRRKCASD CIFAPHFDQD QGAVQFAAVH 60 RVFGASNVAK LLNYLPIDKR TEAVITICFE AQARLRDPVY GCVSHIFSLQ QQIVNLQSEL 120 NYVQNHLAAM EQQQQVLSPA QPLIPMTGAF TELQPASNVQ ANVDKSYLLP TEQQQQYVHM 180 GESSGGAGGS GTSGGTDDLY ELARGLLNRH GRVDGSEEPP QPKHQMWPIN EEDDEDDDDD 240 VLRSGSFVVG RGCQGANLLL NKMPGSQLQR RNEASGRVLA R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-34	22	127	7	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-34	22	127	7	111	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024995935.1	8e-64	LOB domain-containing protein 30
TrEMBL	A0A1E5UT08	1e-64	A0A1E5UT08_9POAL; LOB domain-containing protein 18
STRING	Gorai.004G161100.1	1e-61	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82