PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00263.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 428aa MW: 46745.3 Da PI: 9.2962

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00263.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.5	2.2e-52	6	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 lppGfrFhP+d+elv +yL +k++gk + +vd++k+ePwdLp+++ +++ewyfFs +d+kyatg+r+nra Zmw_sc00263.1.g00080.1.am.mk 6 LPPGFRFHPRDDELVLDYLYHKLSGKGggggAYGGINMVDVDLNKCEPWDLPEEACVGSREWYFFSLHDRKYATGQRTNRA 86 79**********************988753333459999*******87777899***************** PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t+sgyWkatgkd+++ +++g++vg++ktLvfy+grap+g+kt+Wvmhe+r+ Zmw_sc00263.1.g00080.1.am.mk 87 TRSGYWKATGKDRPISRRRGAVVGMRKTLVFYQGRAPRGRKTEWVMHEFRV 137 ***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-55	3	163	IPR003441	NAC domain
PROSITE profile	PS51005	54.957	6	163	IPR003441	NAC domain
Pfam	PF02365	8.1E-26	7	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MVEARLPPGF RFHPRDDELV LDYLYHKLSG KGGGGGAYGG INMVDVDLNK CEPWDLPEEA 60 CVGSREWYFF SLHDRKYATG QRTNRATRSG YWKATGKDRP ISRRRGAVVG MRKTLVFYQG 120 RAPRGRKTEW VMHEFRVEGP AIADAVAGSP LTEDWVLCRV FYRSRTVTTR PAPADVEAGS 180 LANELITLPM PHAPPVDAYL LALDHAPAAT IGGFYYQQDD DGGLPAAQGK TLSNFRELLT 240 SMMERDGGAA AKPELHQHQH HQDWTEAAYA AQQSAVAAQA WNPFLNSGWS RVCQGIPSPA 300 ARSSRFAASA LPPPGSPVFA RVRPLLVSPA LGCQQLPPFP SKPPAQAFGT VVSICALLRG 360 VAALIVEVSL VRIIGDFLHY KTSSFCVLVP RQFGGSRDSP ERSIGCAGVR VSSMNRPSSR 420 VYIAIVLF

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MVEARLPPGF RFHPRDDELV LDYLYHKLSG KGGGGGAYGG INMVDVDLNK CEPWDLPEEA  60
CVGSREWYFF SLHDRKYATG QRTNRATRSG YWKATGKDRP ISRRRGAVVG MRKTLVFYQG  120
RAPRGRKTEW VMHEFRVEGP AIADAVAGSP LTEDWVLCRV FYRSRTVTTR PAPADVEAGS  180
LANELITLPM PHAPPVDAYL LALDHAPAAT IGGFYYQQDD DGGLPAAQGK TLSNFRELLT  240
SMMERDGGAA AKPELHQHQH HQDWTEAAYA AQQSAVAAQA WNPFLNSGWS RVCQGIPSPA  300
ARSSRFAASA LPPPGSPVFA RVRPLLVSPA LGCQQLPPFP SKPPAQAFGT VVSICALLRG  360
VAALIVEVSL VRIIGDFLHY KTSSFCVLVP RQFGGSRDSP ERSIGCAGVR VSSMNRPSSR  420
VYIAIVLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-45	3	164	12	169	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824710.1	1e-127	NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	9e-69	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A1E5W585	1e-127	A0A1E5W585_9POAL; NAC domain-containing protein 21/22
STRING	Si010680m	1e-125	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1012	37	138

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]