PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00233.1.g00220.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 333aa MW: 35238.6 Da PI: 6.4001

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00233.1.g00220.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	41.1	2.5e-13	258	283	9	34
GATA 9 TplWRrgpdgnktLCnaCGlyyrkkg 34 T+lWR gp g+ktLCnaCG++y++ + Zmw_sc00233.1.g00220.1.sm.mkhc 258 TILWRAGPLGPKTLCNACGVRYKSGR 283 99*********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.3E-4	252	294	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	9.98E-9	257	307	No hit	No description
Pfam	PF00320	1.2E-10	258	283	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	3.1E-8	258	281	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.39E-10	258	306	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
QKSSQRREAA STHRLLLGAK SRRSMASGAF LDQMLREQSL LEATCGDLFD HIEDLLDFSK 60 EESAADVLLL DAPAPGSPLS ARIIDVGARS NAVEPSPALV APAQDGLFVD AAAAAGAQGF 120 KDGGHIGTCD DLDMAQLEWL SGLFDDTSIP HEPAFPATCA APIKSSELAA SAGLPMLPPD 180 ELDDTVFRSS SPISVLEHNN NNAGSASSSS SSSSSSSAWS APVSPRPEPP ALVIPARARS 240 KRSRASAFSG DRAVEPPTIL WRAGPLGPKT LCNACGVRYK SGRLFPEYRP AASPTFVPSI 300 HSNSHKKVVE MRQKAVRSGD PSCDLLQFIR RRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015688759.1	1e-120	PREDICTED: GATA transcription factor 6-like
TrEMBL	A0A2T7FDI5	5e-91	A0A2T7FDI5_9POAL; Uncharacterized protein
TrEMBL	A0A2T8KYD8	5e-91	A0A2T8KYD8_9POAL; Uncharacterized protein
STRING	Pavir.Ab03246.1.p	4e-92	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5169	34	51