PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00232.1.g00530.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 804aa MW: 91909.2 Da PI: 7.1756

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00232.1.g00530.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.8	6.4e-27	17	104	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 +fYn+YA++vGF vr+s+ +++++ it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+++++++++gk+++t Zmw_sc00232.1.g00530.1.es.mkhc 17 EFYNAYAEKVGFFVRRSTLWTTSKS-IITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPASMTIRLTTNGKYRLT 93 6*****************99555.5************9999.999************************ PP FAR1 80 kleleHnHela 90 ++ +HnH+la Zmw_sc00232.1.g00530.1.es.mkhc 94 EFIPNHNHQLA 104 *******97 PP
2	FAR1	82.5	7.1e-26	146	232	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY+ YA ++GF vrk++++ + ++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a+++++++ +gk++vt Zmw_sc00232.1.g00530.1.es.mkhc 146 EFYSMYAGKIGFGVRKASMTVN-ADNVITRRMFVCSKEGFREKKRGA-RRVQKPRPETRTGCPACMVIRLTANGKYHVT 222 6**************99988.7777************9998.9999*********************** PP FAR1 80 kleleHnHel 89 ++++ HnH+l Zmw_sc00232.1.g00530.1.es.mkhc 223 EFVTFHNHQL 232 ******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-24	17	104	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.8E-22	146	232	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-22	349	442	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.546	617	664	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.3E-8	634	663	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-6	639	666	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence Send to blast
MMPKINMIFD GENDAYEFYN AYAEKVGFFV RRSTLWTTSK SIITRRTFVC SREGFREKKK 60 GAKEAKCPRP ETRIGCPASM TIRLTTNGKY RLTEFIPNHN HQLATASTIH MLKEKKIRRK 120 ARAVRENLVD DTVRTPEFEN EDEAYEFYSM YAGKIGFGVR KASMTVNADN VITRRMFVCS 180 KEGFREKKRG ARRVQKPRPE TRTGCPACMV IRLTANGKYH VTEFVTFHNH QLGAAAASNL 240 VIVSQSAEND QLDGVHLVDR SPGDPIHKQN LINENVIGYT PEGRSCKRYK LTKTPHHGDV 300 GAILEYLQKM QHDNPSFYYA IKSDEDGNFT NFFWADSKSI IDFDHFGDVV CLDSGYALQD 360 YGRPLALFTG LNHHKQTVIF GAAMLYDESN EAFKWLLDTF KMAMNQTHPK TLLTDRSAVI 420 SEVVTAAWPD TAHRYCVWQI YQCALQQLSQ AFHGSRTLEC DFKRCLFDCE DEDEFLTAWK 480 EMLEKYDLED NQWLADLFSV KERWALPYGR ETIYADMKSA QQKESLTAEL KNHMSLDYDL 540 LHFFEQFERL LCHRRSAELE ADVNVNQSTK KEPPMRILRQ AANVYTPAAF KMFEREFELY 600 MDCLLYRCSE VGTISEYRIC VEDNPKGHFV KFDSLNSMVS CSCKTFEFMG IPCRHMLKVL 660 DTRNIKDLPS QYILKRWRKD AKSGSSNGGY AFSFDGDTES AQAKRYTTLC RIYGMAAARA 720 ATTLDSFSYM ESQSRILMDQ VEQVIQASPP DISVFIGANC DQTENSVDNI ATGGMDSHAN 780 FINGSADGSL TFPFTLGAGA LDFR

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence Send to blast

MMPKINMIFD GENDAYEFYN AYAEKVGFFV RRSTLWTTSK SIITRRTFVC SREGFREKKK  60
GAKEAKCPRP ETRIGCPASM TIRLTTNGKY RLTEFIPNHN HQLATASTIH MLKEKKIRRK  120
ARAVRENLVD DTVRTPEFEN EDEAYEFYSM YAGKIGFGVR KASMTVNADN VITRRMFVCS  180
KEGFREKKRG ARRVQKPRPE TRTGCPACMV IRLTANGKYH VTEFVTFHNH QLGAAAASNL  240
VIVSQSAEND QLDGVHLVDR SPGDPIHKQN LINENVIGYT PEGRSCKRYK LTKTPHHGDV  300
GAILEYLQKM QHDNPSFYYA IKSDEDGNFT NFFWADSKSI IDFDHFGDVV CLDSGYALQD  360
YGRPLALFTG LNHHKQTVIF GAAMLYDESN EAFKWLLDTF KMAMNQTHPK TLLTDRSAVI  420
SEVVTAAWPD TAHRYCVWQI YQCALQQLSQ AFHGSRTLEC DFKRCLFDCE DEDEFLTAWK  480
EMLEKYDLED NQWLADLFSV KERWALPYGR ETIYADMKSA QQKESLTAEL KNHMSLDYDL  540
LHFFEQFERL LCHRRSAELE ADVNVNQSTK KEPPMRILRQ AANVYTPAAF KMFEREFELY  600
MDCLLYRCSE VGTISEYRIC VEDNPKGHFV KFDSLNSMVS CSCKTFEFMG IPCRHMLKVL  660
DTRNIKDLPS QYILKRWRKD AKSGSSNGGY AFSFDGDTES AQAKRYTTLC RIYGMAAARA  720
ATTLDSFSYM ESQSRILMDQ VEQVIQASPP DISVFIGANC DQTENSVDNI ATGGMDSHAN  780
FINGSADGSL TFPFTLGAGA LDFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800025.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025800026.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025800027.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T7EXF1	0.0	A0A2T7EXF1_9POAL; Uncharacterized protein
STRING	Pavir.Bb03075.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967