PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00230.1.g00180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 164aa MW: 18793.8 Da PI: 10.3026 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.4 | 9.8e-22 | 27 | 115 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 fk+l ++ ++rl++p +f++++g +++ ++tl+++sg ++v++ +++ g+ v+++GWk Fv+a++Lk gDf+ Zmw_sc00230.1.g00180.1.es.mkhc 27 FKIL--VGNF-RSRLMIPDNFVQHFGARPTG--MVTLKSRSGYAFDVEV--TNRLGKLVFQTGWKAFVNAHDLKRGDFL 98 5655..3344.567********777888766..8***************..**************************** PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 vFk++g s+f +v +f+ Zmw_sc00230.1.g00180.1.es.mkhc 99 VFKYNGFSQF--KVLIFDP 115 ****988999..9999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.8E-26 | 19 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-25 | 21 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.69 | 23 | 116 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.95E-21 | 24 | 114 | No hit | No description |
SMART | SM01019 | 4.2E-13 | 26 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-19 | 26 | 114 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MRKPHKGCKE MNGHHKPNHK DKDRHFFKIL VGNFRSRLMI PDNFVQHFGA RPTGMVTLKS 60 RSGYAFDVEV TNRLGKLVFQ TGWKAFVNAH DLKRGDFLVF KYNGFSQFKV LIFDPSCCEK 120 VLPCPLEKNE IEMCKEPVKS SSSCVNPSMK SPESNGKAWT KREG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796557.1 | 3e-53 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
TrEMBL | A0A2S3IK24 | 8e-53 | A0A2S3IK24_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7C3Q1 | 2e-52 | A0A2T7C3Q1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01270.1.p | 3e-54 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |