PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00224.1.g00390.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 703aa    MW: 74710.8 Da    PI: 9.5046
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00224.1.g00390.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12117166355
                                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     ++h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a++   +v+YIk+Lq
  Zmw_sc00224.1.g00390.1.am.mkhc 117 TSHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASVIGGVVNYIKELQ 166
                                     68*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.303114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-16117188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-12117178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.89E-13117170No hitNo description
SMARTSM003532.0E-11120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.50.50.603.5E-12508560IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF519051.94E-9510637IPR023753FAD/NAD(P)-binding domain
PfamPF012661.3E-7512620IPR006076FAD dependent oxidoreductase
Gene3DG3DSA:3.50.50.603.5E-12595636IPR023753FAD/NAD(P)-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0016491Molecular Functionoxidoreductase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MAEALCDQLF ADDVLDGELH HHPSDAEDLF GILEAWEDCV SGGSSVNTPR GGGGGGVDAR  60
GSKRRPPQGG CDVDSRDPDD GSSMVVQEPA KRRRCSPAPV AVVSTAGEGG AGKATATSHI  120
AVERNRRKQM NEHLAVLRSL MPCFYVKRGD QASVIGGVVN YIKELQQLLQ SLEAKKQRKA  180
YADQVLSPRP PPACCSPRPP LSPRPPLPFK STPPMSPRPA VPISPRTPPT TSSSPYNKLI  240
CRQPSLSLPL PLPLPLPLPL PLPPAPGSAY ASPATTPTTS QESAAAASSY LPSLDAIAAE  300
LCAYAANGKQ QATAPAGGGG VVVLPEVKVE FSGANLVVKT VSQRAPGQAV KVIAALEGRS  360
LEILHAKIST VDDTAVNSFT IKPPAPPPPA SRLDTPSSVA RPLLRHCRGP LLCHRLPRLA  420
GPRCHWPVPV MYSPELRAPD RGGGLSLQHP LPMDPAAAFA AAPKLGPALF SSSVTSPSSR  480
PSLRLSVRGP RRGRPLLALP PRSQPGDVSH HDVVVVGAGI VGLAIARHLL LHTPLSVAVA  540
DAAVPCSGAT GAGMHTRLPF WLSFVLMVVE LEMRCYERFG DRVVRFAGQG YIWMSHRTPG  600
SDTWQLAVRS KQLWEELAAE VESQGGGGAR ERLGWMRTEP TSTLDIPVKP RKGHLLVLQN  660
FDKVELNHGL MEEAVGSSKD FQGRSINPLL RVYGNVQRSS FLL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813040.11e-134transcription factor SPEECHLESS-like
TrEMBLA0A2T7DY221e-133A0A2T7DY22_9POAL; Uncharacterized protein
STRINGPavir.Db01402.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577