PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00220.1.g00120.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 583aa    MW: 62468.1 Da    PI: 9.6335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00220.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-066991123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C++Cg+ F r  nL+ H r+H
  Zmw_sc00220.1.g00120.1.am.mk 69 YVCEICGQGFQRDQNLQMHRRRH 91
                                  9*********************9 PP
2zf-C2H211.40.001148169223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                    C  C+k +  +s++k H++t+
  Zmw_sc00220.1.g00120.1.am.mk 148 ACARCSKAYAVHSDYKAHLKTC 169
                                   6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.4E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.61E-56891No hitNo description
SMARTSM003550.00326991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6356991IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355110111141IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.61E-5142167No hitNo description
SMARTSM00355230147174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MLSSCAPTTA MPHPEPAVAG TPEQFRSLQI ATAGAAGGAK KKRRPAGTPD PDAEVVSLSP  60
RTLLESDRYV CEICGQGFQR DQNLQMHRRR HKVPWKLLKR EAGEAARKRV FVCPEPSCLH  120
HDPAHALGDL VGIKKHFRRK HSGHRQWACA RCSKAYAVHS DYKAHLKTCG TRGHTCDCGR  180
VFSRGRQQQQ RSVSVYSVRV VVAYTAGVES GRPAGRLESW IPVPAIAWRC VACDREEQSA  240
DERAHTIQPR HHFTTLVFHS FHSTLRTQAR LVESFIEHQD TCNASRPARA EAASTSSPAS  300
GGGNGGGGLG VTAASSSQQQ QSRQVHAAAA MSRTMSSACP SSGGDLVVSA GASPAVTAMA  360
SSSTANVAGF HRFDPPAPSV ERRRPGVHNL ELQLMPPRED GATLPGFGYF ASAPHSPSVP  420
PRRGAEHPTR LQLSIGVGGR ATDDKPQASA LGAASATAAR LNEEAREQLR LALAEKAAAE  480
AARAQARRQA ELAEQELASA RRMRQQAQVE LGRAXXXXHA VRQVDATLMQ VTCYSCRGKF  540
RARAGAVSSE VASYVSSVVT EGGDAEVDND DDGLPSHGKM DIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-13143184344Zinc finger protein JACKDAW
5b3h_F7e-13143184344Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13943KKKRR
23944KKKRRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444487.11e-117protein indeterminate-domain 14
TrEMBLA0A0E0M1W11e-145A0A0E0M1W1_ORYPU; Uncharacterized protein
STRINGOPUNC09G10740.11e-146(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124