PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00218.1.g00340.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 423aa MW: 46833.3 Da PI: 7.3513

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00218.1.g00340.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.7	1.3e-50	161	289	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrF P+deelv++yL kkv+++++ ++ evd++ ePw+Lp +k + +ewyfFs rd+kyatg+r+nratk+g Zmw_sc00218.1.g00340.1.am.mk 161 LPPGFRFYPSDEELVCHYLYKKVANERIAQ-GTLVEVDLHAREPWELPDVAKLTASEWYFFSFRDRKYATGSRTNRATKTG 240 79***********************998.88***********77777889********************* PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd+ev s ++++vg++ktLvfy+grap+g+k+ Wvmhe+rl Zmw_sc00218.1.g00340.1.am.mk 241 YWKATGKDREVRSPasTRAVVGMRKTLVFYQGRAPNGVKSGWVMHEFRL 289 ********99777788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-60	155	308	IPR003441	NAC domain
PROSITE profile	PS51005	58.558	161	308	IPR003441	NAC domain
Pfam	PF02365	1.3E-27	162	289	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MYGADRSING QTVDFLSRSV ACGAGTLHII SASRYSTHTR ASGKLALDHV WSRSIDAAWL 60 GNLPGRVWLC EADDARCRCR CSCTTLARFQ YSARPAVRAT EMAARYWNLS TWLRSVSVVA 120 SADGDLTAAR HVSSRPADQL DKVATPRRQD EVLDSMIEST LPPGFRFYPS DEELVCHYLY 180 KKVANERIAQ GTLVEVDLHA REPWELPDVA KLTASEWYFF SFRDRKYATG SRTNRATKTG 240 YWKATGKDRE VRSPASTRAV VGMRKTLVFY QGRAPNGVKS GWVMHEFRLD APHSQPREDW 300 VLCRVFQKTK GDGDGQVDSA CGASSPTLTG SSHAMPEQEH HHAAPCGYYG PGFLPQQEVA 360 VLPYYDGPAV DRHGFPQDDA GGALPGLEFG ARGVAGDEYG FGWFDMAGFD EMTTNHGFPQ 420 GWN

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MYGADRSING QTVDFLSRSV ACGAGTLHII SASRYSTHTR ASGKLALDHV WSRSIDAAWL  60
GNLPGRVWLC EADDARCRCR CSCTTLARFQ YSARPAVRAT EMAARYWNLS TWLRSVSVVA  120
SADGDLTAAR HVSSRPADQL DKVATPRRQD EVLDSMIEST LPPGFRFYPS DEELVCHYLY  180
KKVANERIAQ GTLVEVDLHA REPWELPDVA KLTASEWYFF SFRDRKYATG SRTNRATKTG  240
YWKATGKDRE VRSPASTRAV VGMRKTLVFY QGRAPNGVKS GWVMHEFRLD APHSQPREDW  300
VLCRVFQKTK GDGDGQVDSA CGASSPTLTG SSHAMPEQEH HHAAPCGYYG PGFLPQQEVA  360
VLPYYDGPAV DRHGFPQDDA GGALPGLEFG ARGVAGDEYG FGWFDMAGFD EMTTNHGFPQ  420
GWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-48	154	308	10	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-48	154	308	10	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-48	154	308	10	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-48	154	308	10	165	NO APICAL MERISTEM PROTEIN
4dul_A	3e-48	154	308	10	165	NAC domain-containing protein 19
4dul_B	3e-48	154	308	10	165	NAC domain-containing protein 19
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002452475.1	1e-120	NAC domain-containing protein 100
Swissprot	Q9FLR3	3e-59	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	C5XXS9	1e-119	C5XXS9_SORBI; Uncharacterized protein
STRING	Sb04g026440.1	1e-119	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]