PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00218.1.g00290.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 665aa    MW: 73681.6 Da    PI: 10.8637
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00218.1.g00290.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-16436483148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg+WT+eEd +lv  ++++G  +W++ +r  g+ R++k+c++rw +yl
  Zmw_sc00218.1.g00290.1.am.mk 436 RGPWTPEEDRILVAHIERHGHSNWRALPRLAGLLRCGKSCRLRWINYL 483
                                   89******************************99************97 PP
2Myb_DNA-binding50.35.5e-16489534148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Zmw_sc00218.1.g00290.1.am.mk 489 RGNFTREEEDAIIQLHNMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 534
                                   89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-24427486IPR009057Homeodomain-like
PROSITE profilePS5129416.247431483IPR017930Myb domain
SuperFamilySSF466893.59E-30432530IPR009057Homeodomain-like
SMARTSM007179.7E-14435485IPR001005SANT/Myb domain
PfamPF002492.7E-14436483IPR001005SANT/Myb domain
CDDcd001674.44E-11438483No hitNo description
PROSITE profilePS5129425.543484538IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-26487538IPR009057Homeodomain-like
SMARTSM007174.0E-15488536IPR001005SANT/Myb domain
PfamPF002497.5E-15489534IPR001005SANT/Myb domain
CDDcd001674.15E-11491534No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MFSASHKFTS QPAAFISTVA RRRSVNLPTR GHVLLRAEKT PLDPALGHLT VPRRNVAKSS  60
CVTETRLSTT LHGPLANSKT QYRNRPLRIG HSQLAPGSEM RLALSIDPES WAGASSPRPS  120
SVEALSAASA YGARRWRRGA SKARRFVDSA RPDQPQSIHL RYDTDGPVDP VRNFPHAGRA  180
SLPSRPRREN RSERIKVRCR TLHPALIKSM TSSSVKLLLF PRDEGTTPYF YVALIFIQDG  240
VKKSYPGRYW RRHYGLQGGN VKVPARSNGS TEELVSRIDT RQRFSPTHPC HKRQQRVQTP  300
DEPPRNKKKT TEAASVAAGI HPNELNKLER FGITIKLLFR FLLILSRSWP NPSPSPSFLP  360
STNLPDLTTF SAARPFFSAA ATLVASCRAP GINSPALAPS PPQQPAAHTI ENDRASSVLR  420
PLMGRAPCCE KMGLKRGPWT PEEDRILVAH IERHGHSNWR ALPRLAGLLR CGKSCRLRWI  480
NYLRPDIKRG NFTREEEDAI IQLHNMLGNR WSAIAARLPG RTDNEIKNVW HTHLKKRLEP  540
KAPNAAAPKR RAKKQQQPNQ VVVLDGPTTA PVSPEQSLST ASQSAATTTD CSAASSTLEN  600
ADSFTSEEFM IDDSFWAETL AMSTVVDSAE SSMDDGFGAS SGDDTDFWLN VFMQAGGVET  660
YLPQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-254345395109B-MYB
1h8a_C2e-2543453825128MYB TRANSFORMING PROTEIN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563