PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00217.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 519aa    MW: 57542.8 Da    PI: 9.2096
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00217.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-13236297148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..............TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..............kgRtlkqcksrwqkyl 48 
                                   rg+WT +Ed+ lv++++ +G g+W++ a   g              ++Rt+k+c++rw++yl
  Zmw_sc00217.1.g00030.1.am.mk 236 RGPWTVDEDLALVNYITDHGEGRWNALAPAAGhhplfslsylhargLKRTGKSCRLRWLNYL 297
                                   89**********************************************************97 PP
2Myb_DNA-binding42.61.4e-13303343146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg +T++E++l++d++ ++G++    Ia++++ gRt++++k++w++
  Zmw_sc00217.1.g00030.1.am.mk 303 RGDFTADEHLLILDLHSRYGNR----IAQHLP-GRTDNEIKNYWRT 343
                                   899*****************99....******.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-19230300IPR009057Homeodomain-like
PROSITE profilePS5129411.292231297IPR017930Myb domain
SuperFamilySSF466892.81E-22234341IPR009057Homeodomain-like
SMARTSM007171.1E-11235299IPR001005SANT/Myb domain
PfamPF002491.1E-11236297IPR001005SANT/Myb domain
CDDcd001672.80E-8238297No hitNo description
PROSITE profilePS5129419.766298349IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-18301348IPR009057Homeodomain-like
SMARTSM007171.0E-9302347IPR001005SANT/Myb domain
PfamPF002491.8E-11303343IPR001005SANT/Myb domain
CDDcd001675.73E-9306343No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MLRRQWKEAE ARGAAASRRD GLLQPWEKAP AAEAAVLSGG CGAQMLRWIL RWLSSAMPLT  60
CSVSCSKQTG SDDSRVKGAR TAGYHCHTRV VRTHVASPLG IAIPTTQPST YDTPFPCVVA  120
VSIRSTLLLL GKLTPAPFRF KQLKGLIRAP LHHGPRSTWP PNRFLLVALK PHHKNTTTRA  180
CLKTARMASS SQSSRSRTCT PAATTDAALA RCPVVPFDDE SNEGAHDKEE RAELRRGPWT  240
VDEDLALVNY ITDHGEGRWN ALAPAAGHHP LFSLSYLHAR GLKRTGKSCR LRWLNYLRPD  300
VKRGDFTADE HLLILDLHSR YGNRIAQHLP GRTDNEIKNY WRTRVQKHAK QLNCDANSQR  360
FKDAMRYLWT PSLVDSHRFL NANAAGSDHQ DDGYYLTAAL SGVGVTYPSS DSLVTTTSEP  420
HDASFPARKW GELYSYADVR AGEETMAVSS GDWCAARETS QQQAPGMMWP GEQKAAQAVR  480
GAGARFEDPE LSGWVQSFSE VVDATESSFW TLDDVWKTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-192333471103MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-1923334755157MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-1923334755157MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-1923334724126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962755.11e-97transcription factor JAMYB
SwissprotQ2QZJ82e-83JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLK3Z8G12e-96K3Z8G1_SETIT; Uncharacterized protein
STRINGPavir.Cb00499.1.p1e-97(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]