PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00213.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 283aa MW: 31346.2 Da PI: 4.6534 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.7 | 2.3e-19 | 70 | 123 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q+ +Le++Fe + +++ e+++++A+ l+L rqV vWFqNrRa++k Zmw_sc00213.1.g00080.1.sm.mk 70 KKRRLAADQVSALERCFEADDKLDPERKARIARDLRLHPRQVAVWFQNRRARWK 123 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.4 | 5.3e-40 | 69 | 161 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 ekkrrl+++qv++LE++Fe+++kL+perK+++ar+L+l+prqvavWFqnrRAR+ktkq+E+d++aL++++dal++e ++L+ Zmw_sc00213.1.g00080.1.sm.mk 69 EKKRRLAADQVSALERCFEADDKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFNALRSRHDALRHECDELR 149 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLreelke 93 +++++L++e++e Zmw_sc00213.1.g00080.1.sm.mk 150 RDKDALAAEIRE 161 *******99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.066 | 65 | 125 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.63E-17 | 66 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.7E-18 | 68 | 129 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-16 | 70 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.90E-16 | 70 | 126 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-18 | 76 | 123 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 100 | 123 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.5E-14 | 125 | 166 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MKRPSCRGSS VASQGTQEQE SEDSSRYMER QGLDVHGTVD VVASADTYGD EEEDEDELEL 60 AGGRGGLGEK KRRLAADQVS ALERCFEADD KLDPERKARI ARDLRLHPRQ VAVWFQNRRA 120 RWKTKQIERD FNALRSRHDA LRHECDELRR DKDALAAEIR ELREKVEKQM AVKLESMEDR 180 PLQAVTTVYK DGSTDSDSSA VFNEEASPYS GGAAFDHHPS FNGFTSFLAS SSALGSFPSM 240 YSGGPHLDQP EADGFLGAVA TTDGFFAEEQ GTGLGGWYGG DGW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 125 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792352.1 | 1e-115 | homeobox-leucine zipper protein HOX8-like isoform X1 | ||||
Swissprot | Q338Z7 | 2e-86 | HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8 | ||||
TrEMBL | A0A0A9JEK4 | 1e-121 | A0A0A9JEK4_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J35191.1.p | 1e-116 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4283 | 31 | 70 |
Publications ? help Back to Top | |||
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