PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00212.1.g00300.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 300aa MW: 33993.4 Da PI: 7.8735

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00212.1.g00300.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161	4.6e-50	14	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee..vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatg 71 lppGfrFhP+d+elv +yL+kk+++ + ++ +vd++k+ePwdLp + kewyf+s rd+kyatg Zmw_sc00212.1.g00300.1.sm.mkhc 14 LPPGFRFHPRDDELVLDYLAKKLHSGGggsmvsI--YGcpMMVDVDLNKCEPWDLPDIACIVGKEWYFYSLRDRKYATG 90 79*******************99887766432..2243699*********64445679*********** PP NAM 72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +r+nrat+sgyWkatgkd+ + + +g lvg++ktLvfykgrapkg+kt+Wvmhe+r Zmw_sc00212.1.g00300.1.sm.mkhc 91 QRTNRATESGYWKATGKDRLISR-NGLLVGMRKTLVFYKGRAPKGKKTEWVMHEFRT 146 *****************99.999**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-59	4	169	IPR003441	NAC domain
PROSITE profile	PS51005	54.579	14	169	IPR003441	NAC domain
Pfam	PF02365	2.8E-25	15	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MAVMNSLSMV EATLPPGFRF HPRDDELVLD YLAKKLHSGG GGSMVSIYGC PMMVDVDLNK 60 CEPWDLPDIA CIVGKEWYFY SLRDRKYATG QRTNRATESG YWKATGKDRL ISRNGLLVGM 120 RKTLVFYKGR APKGKKTEWV MHEFRTEGQG DPTKLPFKED WVLCRVFYKS RATIAKPHTE 180 NSSYNNVDTA TTSPPPLVDN YNISFDQPGS VQNIEGYEQV PCFSSNPSQP SSSMNVPRSS 240 SMAADQKQHM EKSITDMLMS QFSRFEGNVI KREAPQSNFL QDGFEYLAES GFTQMWNSFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-48	1	169	4	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-48	1	169	4	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-48	1	169	4	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-48	1	169	4	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-48	1	169	7	168	NAC domain-containing protein 19
3swm_B	4e-48	1	169	7	168	NAC domain-containing protein 19
3swm_C	4e-48	1	169	7	168	NAC domain-containing protein 19
3swm_D	4e-48	1	169	7	168	NAC domain-containing protein 19
3swp_A	4e-48	1	169	7	168	NAC domain-containing protein 19
3swp_B	4e-48	1	169	7	168	NAC domain-containing protein 19
3swp_C	4e-48	1	169	7	168	NAC domain-containing protein 19
3swp_D	4e-48	1	169	7	168	NAC domain-containing protein 19
4dul_A	3e-48	1	169	4	165	NAC domain-containing protein 19
4dul_B	3e-48	1	169	4	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022681432.1	0.0	NAC domain-containing protein 21/22
Swissprot	Q84TE6	8e-84	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	K3XYG7	0.0	K3XYG7_SETIT; Uncharacterized protein
STRING	Si006975m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1012	37	138

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]