PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00209.1.g00340.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 473aa    MW: 52167 Da    PI: 4.5107
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00209.1.g00340.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS198.25e-611004632372
                          GRAS   2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknssee 77 
                                    +lLl+ Aeav+ +d +la+a+L++l +l      +++  +++ la +f+++L++++++     y    p+e +   +s +
  Zmw_sc00209.1.g00340.1.am.mk 100 SDLLLTGAEAVEVRDSSLASAVLSKLDHLlpdicENEANGSLHHLAYHFAQGLHHQMSG----AYTPSYPQELP---QSGV 173
                                   689*************************988875566669******************9....56555566665...7788 PP

                          GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skee 157
                                   ++a+ + +e sP+ kf+h+t+NqaIl+a+  +  vH++Df+i +G+QW++++  L+   +g  s+ +T+v   +sg s ++
  Zmw_sc00209.1.g00340.1.am.mk 174 MSAHLMIQEFSPFAKFAHFTTNQAILDATMDDMDVHVVDFNIAEGVQWASFMSDLSR--HGDKSFHLTAVIIDDSGySDNT 252
                                   8888899************************************************98..5778999***999888889999 PP

                          GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238
                                     +t  rL++fAe+l +pf++n+l  +     +l++++ + + ++++++     +l    +sl++ r  +  +vk+l+Pk+
  Zmw_sc00209.1.g00340.1.am.mk 253 CCTTVLRLSEFAESLSLPFKYNFLRLHYAG--DLDDFSRNCQGSVIISCDT--TNLC--YTSLSKLRILLTGCVKKLQPKL 327
                                   99*********************9333333..668898888999***9988..4444..2456666678889********* PP

                          GRAS 239 vvvveqe.......adhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhe 310
                                   vv+ve+e       a+++++sF+e f+e l+++++lf+sl++ +   +     + vEr ++g++i++ v + g e      
  Zmw_sc00209.1.g00340.1.am.mk 328 VVIVEEElvrmgkeASLSHASFVEFFFEGLHHFTVLFESLASCFNGGDdkVCLRLVERDVVGPKIQDFVGQHGCE------ 402
                                   ******96554444555666********************888766663466789******************98...... PP

                          GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                                   tl+    +    GF p +ls  + +qa+ll+  ++ + + v +e+g l l+Wk+rpLvsvS+
  Zmw_sc00209.1.g00340.1.am.mk 403 TLKAAAGANVLEGFMPCELSACNIAQARLLVGLFS-RSFGVANEKGRLQLCWKSRPLVSVSV 463
                                   455555556678***********************.66***********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.15573446IPR005202Transcription factor GRAS
PfamPF035141.7E-58100463IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MMSYPCSPLL SFLPQEVGTD SLWSPHVTLH DNATAADLSP IQLDDREFVD DTVGIDSSVF  60
HEQYCFDADA FANCDVRFLS EEGNNLAAIQ EELMEDSSLS DLLLTGAEAV EVRDSSLASA  120
VLSKLDHLLP DICENEANGS LHHLAYHFAQ GLHHQMSGAY TPSYPQELPQ SGVMSAHLMI  180
QEFSPFAKFA HFTTNQAILD ATMDDMDVHV VDFNIAEGVQ WASFMSDLSR HGDKSFHLTA  240
VIIDDSGYSD NTCCTTVLRL SEFAESLSLP FKYNFLRLHY AGDLDDFSRN CQGSVIISCD  300
TTNLCYTSLS KLRILLTGCV KKLQPKLVVI VEEELVRMGK EASLSHASFV EFFFEGLHHF  360
TVLFESLASC FNGGDDKVCL RLVERDVVGP KIQDFVGQHG CETLKAAAGA NVLEGFMPCE  420
LSACNIAQAR LLVGLFSRSF GVANEKGRLQ LCWKSRPLVS VSVYTPVPKE NIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-2714046654379Protein SCARECROW
5b3h_D1e-2714046654379Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317590.10.0uncharacterized protein LOC8070665
RefseqXP_025826871.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A1Z5RGS20.0A0A1Z5RGS2_SORBI; Uncharacterized protein
TrEMBLA0A2S3ICH50.0A0A2S3ICH5_9POAL; Uncharacterized protein
TrEMBLA0A2T7CK870.0A0A2T7CK87_9POAL; Uncharacterized protein
STRINGSb05g003820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250