PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00209.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 25721.6 Da PI: 7.7693 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 95.9 | 2.6e-30 | 17 | 107 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k ltpsdv+k++rlv+pk++ae++ g ++e++ l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++g Zmw_sc00209.1.g00050.1.sm.mk 17 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSSEKGLILSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLDAG 97 99****************************88889999******************************************* PP -EEEEEE-SS CS B3 78 DfvvFkldgr 87 D+v F++++ Zmw_sc00209.1.g00050.1.sm.mk 98 DVVHFERMRG 107 ******7754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-40 | 12 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-29 | 15 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.74E-29 | 15 | 107 | No hit | No description |
SMART | SM01019 | 4.2E-22 | 17 | 121 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.789 | 17 | 121 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.0E-28 | 17 | 120 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MYTNLHYHHY YERERLFEKP LTPSDVGKLN RLVIPKQHAE RYFPLSGDSS EKGLILSFED 60 EAGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKHLDAGDVV HFERMRGFGI GDRMFIGFRR 120 RGESATPAAA PLPAVHVAAA AQSAGEQQQP WSPMCYSTSG SYPNSPANSY AYRHSVDHDP 180 SNTPHAGESS AASVSSRRLR LFGVNLDCGP EPEAEAPTFP EPNYWSAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-50 | 12 | 121 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-50 | 12 | 121 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827829.1 | 1e-127 | B3 domain-containing protein Os11g0156000-like isoform X1 | ||||
Swissprot | Q53QI0 | 1e-104 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | A0A3L6PZ85 | 1e-129 | A0A3L6PZ85_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Hb01814.1.p | 1e-122 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Publications ? help Back to Top | |||
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