PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00206.1.g00150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 173aa MW: 18984.1 Da PI: 11.9588 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.6 | 3.8e-24 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++ rqvtfskRr+g++KKA+EL +LCda++ i+f +tg+ly++ss Zmw_sc00206.1.g00150.1.am.mk 9 KKIENETSRQVTFSKRRAGMFKKAKELAILCDAQIGDIVFTNTGQLYDFSS 59 68***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.446 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.8E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-23 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.08E-32 | 3 | 61 | No hit | No description |
PRINTS | PR00404 | 9.2E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MVRGKTILKK IENETSRQVT FSKRRAGMFK KAKELAILCD AQIGDIVFTN TGQLYDFSSC 60 SPAPRYRATA PLRRTWAHGR LLHSLLSLGS SLISDGTRPK LRPVAPACRF RPGADAPPGV 120 PAPASSSSMK RFVRYSTPPS PSGRHQSAWP RPKPELCPTV RPAPRRRPGT ALP |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |