PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00203.1.g00540.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 578aa    MW: 60490.1 Da    PI: 8.7774
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00203.1.g00540.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.41.6e-28249298251
                       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                   pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ
  Zmw_sc00203.1.g00540.1.am.mk 249 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 298
                                   9************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.48E-13246299IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-25247298IPR009057Homeodomain-like
TIGRFAMsTIGR015577.9E-21249299IPR006447Myb domain, plants
PfamPF002492.1E-5250298IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MEASSAASPD LSLHISLPST GPSGGRAVAG GAGGGAGGDP WRRLNGSTAS TELSLSPPAE  60
PDADALPWRH RPSAVASSSA ATTSSALMHV PMLQPLDDGG GAAGGGVDVS AAPPIRGIPI  120
YNGPGGFPFL PSAPGGDGHQ KVGFYGSYHH PATWPSSLGS TTPSPLAPGA SSFDPASAFL  180
SPAAHHHHRM LSASGRFNGM LTDTLRGYGA GGMGGIGGHH HHHLHGAQPF GLGSRFMPKF  240
PAKRSMRAPR MRWTSTLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQLL  300
PFLLLFGSDK NANAVTPELV NDGETDGWGL AAKKLPLFVC VRAHGPKLQN HGQRERRERE  360
GKRIAATGGR EGPRRGHGIM VFPSVHFLVF LALIHLLVIR PLVSSPPRGP AEGGSGDDEF  420
SGASQAASGG DNMCVRPFGE HRSTSEGAAS SVGGCGGDMD QSSAGNTNIR WSNSSSSQVS  480
NHEQSSPSLE FTLGRPDWQA CTCRSVASTA KRLIVLVACV MREIARALLW TTGQPLSLVP  540
AGPWGWLGMG LDLELELDDR ARCQGSPTRS RCPTEREK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-14250298351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-14250298351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-14250298351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-14250298351Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353566.11e-116uncharacterized protein LOC100280930 isoform 1
SwissprotQ0J2353e-83ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A3L6DY091e-124A0A3L6DY09_MAIZE; Putative transcription factor RL9
STRINGGRMZM2G082264_P011e-115(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25583787