PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00203.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 471aa MW: 50291.2 Da PI: 6.948

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00203.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.7	1e-13	111	157	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++ +++k+L Zmw_sc00203.1.g00060.1.am.mk 111 RSHSEAERRRRQRINGHLAKLRSLLPNT-----TKTDKASLLAEVLDHVKEL 157 78***********************9.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.609	108	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.01E-13	111	160	No hit	No description
Pfam	PF00010	3.8E-11	111	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-13	112	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-14	112	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-13	114	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	2.3E-5	209	256	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MWDGGVEHGS QEAAHHQLLG PWLGATPFPE PTTVGAFDAA NAGYACDVFG GLGLGHGGVF 60 GFGFDAMQQQ RAADQGSGKA VVSGLLGSLQ AELGRMTPRE MMDAKALAAS RSHSEAERRR 120 RQRINGHLAK LRSLLPNTTK TDKASLLAEV LDHVKELKRQ TSAMMVAATT IPGGEDEAAG 180 PAQMLPTEAD ELAVDAAVGG DGRLVMRASL CCEDRPDLIP DIVRALAALR MRARRAEITT 240 LGGRVRSVLL ITADEGASGH VDGEDDDCRP NALHDDDDER TASHRRHECI ASVQEALRGV 300 MDRRAASSDT SSSGGDGSTK RQRMNYAAQE QCLGLKLNSV SAGGRPFNRV GVASDGWAIE 360 QDHTGDPKKT TDAFPRALAD PDRLQSLPPT VASAMSSCLV HLNADETAPC GGGKRSGFAP 420 SIQTRSNLLC DWYLRGADHL RSTLTDRGGA ASRLARSHFR RRQRWMDHGP N

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MWDGGVEHGS QEAAHHQLLG PWLGATPFPE PTTVGAFDAA NAGYACDVFG GLGLGHGGVF  60
GFGFDAMQQQ RAADQGSGKA VVSGLLGSLQ AELGRMTPRE MMDAKALAAS RSHSEAERRR  120
RQRINGHLAK LRSLLPNTTK TDKASLLAEV LDHVKELKRQ TSAMMVAATT IPGGEDEAAG  180
PAQMLPTEAD ELAVDAAVGG DGRLVMRASL CCEDRPDLIP DIVRALAALR MRARRAEITT  240
LGGRVRSVLL ITADEGASGH VDGEDDDCRP NALHDDDDER TASHRRHECI ASVQEALRGV  300
MDRRAASSDT SSSGGDGSTK RQRMNYAAQE QCLGLKLNSV SAGGRPFNRV GVASDGWAIE  360
QDHTGDPKKT TDAFPRALAD PDRLQSLPPT VASAMSSCLV HLNADETAPC GGGKRSGFAP  420
SIQTRSNLLC DWYLRGADHL RSTLTDRGGA ASRLARSHFR RRQRWMDHGP N

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001347905.1	1e-130	uncharacterized protein LOC100279487
TrEMBL	A0A1D6EPT7	1e-129	A0A1D6EPT7_MAIZE; Transcription factor AIG1
TrEMBL	A0A3L6G0U5	1e-129	A0A3L6G0U5_MAIZE; Transcription factor bHLH30
STRING	GRMZM2G176141_P01	1e-130	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98