PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00199.1.g00400.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 358aa MW: 37997.2 Da PI: 8.7489

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00199.1.g00400.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53	4.6e-17	177	210	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR gp g+k+LCnaCG+++rk + Zmw_sc00199.1.g00400.1.sm.mk 177 CSDCHTTKTPLWRTGPCGPKSLCNACGIRQRKAR 210 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	5.7E-13	169	211	No hit	No description
SMART	SM00401	2.4E-16	171	223	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.3E-14	175	210	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	12.321	175	207	IPR000679	Zinc finger, GATA-type
CDD	cd00202	8.05E-14	176	213	No hit	No description
Pfam	PF00320	8.5E-15	177	210	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	177	202	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MSAIYMSQFS TGLLMEGDHH QDHYHQGHFQ PFTLPKDPPI LFPFMIGNSS ASDSSLSYGS 60 PDHHLIRQQQ AMLEPQHMIG GSAAASAFAT PFPTVESIRD DMIEPSSFDP YDMGRLQVGR 120 SIEAAGGNWT PPAKMRITRK ASADPGAGGV AVKKPRRRAQ AYEDMSSQPN LGVIRVCSDC 180 HTTKTPLWRT GPCGPKSLCN ACGIRQRKAR RAMMASAGAV SADGVKAATA TASDATTVHP 240 KEKKEKRADV DRPLPFKKRC KVVQDHAAAV AAPLASAGKG AGVQATTAEV SDAGLGRDLV 300 DNIGLISWSR PNPAQPAAAA TTACSSFRSA PAPLPVQHDE ITDAAMLLMT LSCGLVWS

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MSAIYMSQFS TGLLMEGDHH QDHYHQGHFQ PFTLPKDPPI LFPFMIGNSS ASDSSLSYGS  60
PDHHLIRQQQ AMLEPQHMIG GSAAASAFAT PFPTVESIRD DMIEPSSFDP YDMGRLQVGR  120
SIEAAGGNWT PPAKMRITRK ASADPGAGGV AVKKPRRRAQ AYEDMSSQPN LGVIRVCSDC  180
HTTKTPLWRT GPCGPKSLCN ACGIRQRKAR RAMMASAGAV SADGVKAATA TASDATTVHP  240
KEKKEKRADV DRPLPFKKRC KVVQDHAAAV AAPLASAGKG AGVQATTAEV SDAGLGRDLV  300
DNIGLISWSR PNPAQPAAAA TTACSSFRSA PAPLPVQHDE ITDAAMLLMT LSCGLVWS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250\|UniProtKB:Q9SZI6, ECO:0000269\|PubMed:23548780}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269\|PubMed:23548780}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812836.1	1e-159	putative GATA transcription factor 22
Swissprot	Q6YW48	7e-70	CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBL	A0A1E5VZ48	1e-165	A0A1E5VZ48_9POAL; Uncharacterized protein
STRING	Pavir.Db01250.1.p	1e-150	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1893	38	99

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Behringer C,Schwechheimer C B-GATA transcription factors - insights into their structure, regulation, and role in plant development. Front Plant Sci, 2015. 6: p. 90 [PMID:25755661]