PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00199.1.g00400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 358aa MW: 37997.2 Da PI: 8.7489 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53 | 4.6e-17 | 177 | 210 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR gp g+k+LCnaCG+++rk + Zmw_sc00199.1.g00400.1.sm.mk 177 CSDCHTTKTPLWRTGPCGPKSLCNACGIRQRKAR 210 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 5.7E-13 | 169 | 211 | No hit | No description |
SMART | SM00401 | 2.4E-16 | 171 | 223 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.3E-14 | 175 | 210 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.321 | 175 | 207 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 8.05E-14 | 176 | 213 | No hit | No description |
Pfam | PF00320 | 8.5E-15 | 177 | 210 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 177 | 202 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MSAIYMSQFS TGLLMEGDHH QDHYHQGHFQ PFTLPKDPPI LFPFMIGNSS ASDSSLSYGS 60 PDHHLIRQQQ AMLEPQHMIG GSAAASAFAT PFPTVESIRD DMIEPSSFDP YDMGRLQVGR 120 SIEAAGGNWT PPAKMRITRK ASADPGAGGV AVKKPRRRAQ AYEDMSSQPN LGVIRVCSDC 180 HTTKTPLWRT GPCGPKSLCN ACGIRQRKAR RAMMASAGAV SADGVKAATA TASDATTVHP 240 KEKKEKRADV DRPLPFKKRC KVVQDHAAAV AAPLASAGKG AGVQATTAEV SDAGLGRDLV 300 DNIGLISWSR PNPAQPAAAA TTACSSFRSA PAPLPVQHDE ITDAAMLLMT LSCGLVWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812836.1 | 1e-159 | putative GATA transcription factor 22 | ||||
Swissprot | Q6YW48 | 7e-70 | CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 | ||||
TrEMBL | A0A1E5VZ48 | 1e-165 | A0A1E5VZ48_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db01250.1.p | 1e-150 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Publications ? help Back to Top | |||
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