PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00198.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HB-other | ||||||||
Protein Properties | Length: 98aa MW: 10907 Da PI: 7.8082 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 33.9 | 5.5e-11 | 73 | 98 | 28 | 53 |
HHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRa 53 +++ +LA++l+L rqV vWFqNrRa Zmw_sc00198.1.g00010.1.sm.mk 73 NQKSDLARRLNLRPRQVEVWFQNRRA 98 6899*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 8.81E-7 | 72 | 98 | No hit | No description |
SuperFamily | SSF46689 | 6.68E-8 | 72 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.726 | 72 | 98 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-8 | 73 | 98 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-9 | 74 | 98 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MELELRLGNS SAPGKDTSTT VLTSAHGGNG EGHEIALELG TGTAKRAEQE NQKTHTGLEE 60 DDEARSQIRQ GRNQKSDLAR RLNLRPRQVE VWFQNRRA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454030.1 | 3e-16 | homeobox-leucine zipper protein HOX7 isoform X2 | ||||
Refseq | XP_021314037.1 | 3e-16 | homeobox-leucine zipper protein HOX7 isoform X1 | ||||
TrEMBL | A0A1E5VT78 | 4e-15 | A0A1E5VT78_9POAL; Homeobox-leucine zipper protein HOX7 | ||||
STRING | Sb04g023410.1 | 1e-15 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12894 | 30 | 35 |