PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00197.1.g00300.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 981aa MW: 107022 Da PI: 10.1433

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00197.1.g00300.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.5	7.4e-14	280	327	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ lv ++ + G g W+ ar g++R +k+c++rw++yl Zmw_sc00197.1.g00300.1.am.mk 280 KGPWTLEEDLVLVSYISENGEGAWDNLARAAGLNRNGKSCRLRWLNYL 327 79********************************************97 PP
2	Myb_DNA-binding	39.6	1.2e-12	333	376	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+ Ed + ++ G++ W++Ia++++ gRt++++k++w++ Zmw_sc00197.1.g00300.1.am.mk 333 RGSITEAEDAVIRELQSTIGNK-WSKIAKHLP-GRTDNEIKNYWRT 376 7889****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.609	275	327	IPR017930	Myb domain
SuperFamily	SSF46689	9.77E-28	278	374	IPR009057	Homeodomain-like
SMART	SM00717	7.7E-12	279	329	IPR001005	SANT/Myb domain
Pfam	PF00249	6.4E-12	280	327	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-18	281	333	IPR009057	Homeodomain-like
CDD	cd00167	2.85E-8	282	327	No hit	No description
PROSITE profile	PS51294	23.241	328	382	IPR017930	Myb domain
SMART	SM00717	2.1E-12	332	380	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-11	333	376	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-22	334	381	IPR009057	Homeodomain-like
CDD	cd00167	2.37E-9	337	376	No hit	No description
SuperFamily	SSF53756	2.74E-35	676	951	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 981 aa Download sequence Send to blast
MRLLRARRMG SGYFTTWSGG SNRRSAAEPR TQQQQRGRER TEARAEVKAE ARGHGGAVLE 60 PRRRGRWRWA HHDSHTIVDG RQSTPFWSHS IKAARLTLVI NLASDNNPLF LPPTNKTWPQ 120 RNIAGPHSSS IGIHSTFHKP SRAPPRPDRG GPPNRFRAKG HRATAPAVTF PENGVGLERK 180 QPSPFPRRGK VAARKPSSTN KEHVWVPTHT CAITLARCRR RRRVAYITIG AEQSTRRVDR 240 SLGLCSASAP FDDHAASATR ASVRSMEART RGGEAAAVRK GPWTLEEDLV LVSYISENGE 300 GAWDNLARAA GLNRNGKSCR LRWLNYLRPG VRRGSITEAE DAVIRELQST IGNKWSKIAK 360 HLPGRTDNEI KNYWRTRIQR KRPPALTMGA GAVSEGASSS SGWASPDSSD AGAGARDCWL 420 FMQPKTEPQA CLATGVIKSE GASSALASRD SSNAGDDWYT QASHPAYHSS SGLGLAADHL 480 GTVGVDAATA AQFFSSTSEF ADGFWNALNN FWETVPVKVD ERPIALSETG TLSTLGTVST 540 VQSLASPSPA HAGHEKPRLG RSPSAIERVR GCRMRKRRAG RFGGGARSGK RGTWGSQSEP 600 EVLNRPVGFD VWETDRALSE HGPLHRVWAC ETALGRVVIS HDLKPWMFSE LDKADSLEAQ 660 SKEKLKSGEA MVIKNEHGPV HILFFPFLAP GHLIPIADMA ALFAARGVKC TILTTPANAV 720 IIRSAVDRAN DGFRGSDAPA IDIAVVPFPD VGLPPGTESA SAVNSPAGRD KFFQGIQLLC 780 EPFNQFLAEN PQDAVVSDSF FDWSADAAAA HGVPRLAFFG SSMFAQACTD SMLRNNPLES 840 APENPDALVA LSELPHRVEL RRSQMLDPKK RQWHWDYFQR MNAADQRSYG ELFNSFHELE 900 PEFLEYYATT LGRRVWLVGP VGLASKDVVT RGATELSPDA DGCLCWLDSK PAVLSDSDLV 960 TIRESGFLAA IGALRILGPG L

Sequence ? help Back to Top

Protein Sequence Length: 981 aa Download sequence Send to blast

MRLLRARRMG SGYFTTWSGG SNRRSAAEPR TQQQQRGRER TEARAEVKAE ARGHGGAVLE  60
PRRRGRWRWA HHDSHTIVDG RQSTPFWSHS IKAARLTLVI NLASDNNPLF LPPTNKTWPQ  120
RNIAGPHSSS IGIHSTFHKP SRAPPRPDRG GPPNRFRAKG HRATAPAVTF PENGVGLERK  180
QPSPFPRRGK VAARKPSSTN KEHVWVPTHT CAITLARCRR RRRVAYITIG AEQSTRRVDR  240
SLGLCSASAP FDDHAASATR ASVRSMEART RGGEAAAVRK GPWTLEEDLV LVSYISENGE  300
GAWDNLARAA GLNRNGKSCR LRWLNYLRPG VRRGSITEAE DAVIRELQST IGNKWSKIAK  360
HLPGRTDNEI KNYWRTRIQR KRPPALTMGA GAVSEGASSS SGWASPDSSD AGAGARDCWL  420
FMQPKTEPQA CLATGVIKSE GASSALASRD SSNAGDDWYT QASHPAYHSS SGLGLAADHL  480
GTVGVDAATA AQFFSSTSEF ADGFWNALNN FWETVPVKVD ERPIALSETG TLSTLGTVST  540
VQSLASPSPA HAGHEKPRLG RSPSAIERVR GCRMRKRRAG RFGGGARSGK RGTWGSQSEP  600
EVLNRPVGFD VWETDRALSE HGPLHRVWAC ETALGRVVIS HDLKPWMFSE LDKADSLEAQ  660
SKEKLKSGEA MVIKNEHGPV HILFFPFLAP GHLIPIADMA ALFAARGVKC TILTTPANAV  720
IIRSAVDRAN DGFRGSDAPA IDIAVVPFPD VGLPPGTESA SAVNSPAGRD KFFQGIQLLC  780
EPFNQFLAEN PQDAVVSDSF FDWSADAAAA HGVPRLAFFG SSMFAQACTD SMLRNNPLES  840
APENPDALVA LSELPHRVEL RRSQMLDPKK RQWHWDYFQR MNAADQRSYG ELFNSFHELE  900
PEFLEYYATT LGRRVWLVGP VGLASKDVVT RGATELSPDA DGCLCWLDSK PAVLSDSDLV  960
TIRESGFLAA IGALRILGPG L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-24	280	381	7	107	B-MYB

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	195	RKQPSPFPRRGKVAARKP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP430	2	2