PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00176.1.g00540.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 814aa    MW: 87682.2 Da    PI: 8.8909
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00176.1.g00540.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-05526223
                                  EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                  +C+ C+++F ++  L  H+r+H
  Zmw_sc00176.1.g00540.1.am.mk  5 TCKLCSRRFASPRALAGHMRSH 26
                                  6********************9 PP
2zf-C2H211.70.00077259281123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++Cp+C ++Fs+   L  H r+H
  Zmw_sc00176.1.g00540.1.am.mk 259 HECPYCYRVFSSGQALGGHKRSH 281
                                   79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0078426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139123.6E-4626IPR007087Zinc finger, C2H2
SMARTSM0035555198218IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-9198222IPR007087Zinc finger, C2H2
SuperFamilySSF576672.52E-6198220No hitNo description
SuperFamilySSF576672.52E-6254281No hitNo description
SMARTSM003550.2259281IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-12259281IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39259281IPR007087Zinc finger, C2H2
PROSITE patternPS000280261281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MAKNTCKLCS RRFASPRALA GHMRSHSLAA SAAAAAAAAA EAAAAKQQIS SASSASTSFT  60
TADDEDVGFK KPASIHALRE NPKRSLRAAD GSSFSSDRES EAESTQPPAK RASPPAAWGE  120
ADPVSSLSEA ATPEEDVALS LMKLSRDSWP SASRVEEADY AEDDDSDDDG YVAPPAPTPP  180
RRLAAPAPAP VAEKRTQFQC TACKKVFRSY QALGGHRASN VRGGRGGCCA PPVAPPPPPP  240
QPQTPSPLPE QQHGDEAPHE CPYCYRVFSS GQALGGHKRS HVCGAAAAAA AQQAAPPSPI  300
KNPGMIDLNV EPPSEEVELS AVSDPHFNPA ASSGTCMRRS FYCCHEQWLV SRSCLLACLA  360
LGQLGRDRQC VSWGSLCGAP PEADRAGETV GTRVRAWRVL MTAKGRLPRR GRQILIGRTD  420
CDGDTQLGIL AASLSAVHSS SSSTLVTIRS RRYCEKKIGP HPCLHVSSVA VLVLVARHHS  480
CPFPHTRNDQ RILGSAVHGA AGRQQHAAVL FLPMMVVRTE RPAGWPGIFL PWDWEEHRKL  540
LANLQVYRAS SVLRFSSVQS VTQVAWHAPC VRAGRPTDPI HRPTHRFVVA RSLAPKLDHH  600
MVGGEQAKPI QASRDPGRGE ERRGEERLGC KPESGEEKYP RSNESMLMAT MGTRDACSEK  660
KSVGLGLAGW GLGLEKKLTR RPPPAEQDVP VESPSCRSLH RSLAIHPFIG YVVQVPYYNY  720
GIRSCTQQHC ASMSGTRRGS ACGLLPACTT RPRCSPAATE QVMLGSVFRQ FQCNDKHDAD  780
RPPEMFSRGG VPLEQKHKSD WIFSSSRSIV KGTR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377